Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0861
(446 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 31 0.081
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 28 0.57
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 5.3
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.3
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 7.0
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 24 9.3
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 24 9.3
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 24 9.3
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc... 24 9.3
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 24 9.3
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 31.1 bits (67), Expect = 0.081
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 34 YRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFIIKDHEKKGLET 213
Y T+ T+ +IPK E+ SI + D+ + +++ M+ I+ ++K LE
Sbjct: 3 YETNTPTEESIIPKHEDGEEYNSIYLSRFEKDISISQTLDFSQFMQTQILLTAKRKALEL 62
Query: 214 SKD 222
D
Sbjct: 63 GDD 65
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 28.3 bits (60), Expect = 0.57
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 103 INTIGNKADVILPNSIEMPPLMK 171
I T+ N A+++ PN +EM P +K
Sbjct: 5 IRTVHNMAELLHPNKVEMKPFLK 27
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.0 bits (52), Expect = 5.3
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 10 KLPNITEIYRTSYKTDYQLIPKR 78
+L ++ ++Y YKT+Y+ + KR
Sbjct: 252 ELSSMRKVYFVKYKTEYEFLQKR 274
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 5.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 3 ARETTQYYRNISHIIQN*LSAYPQKRRN*VVRVYKHHWK 119
++E YR S ++QN L Y +K V+ +Y+ HW+
Sbjct: 125 SKEYLTAYRR-SELLQNKLHEYQKKLITRVLDMYQLHWQ 162
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 355 GIPSYREGLTGFPNPIVNFIVGCSLAFAILFVL 257
G P + +TG P P V ++ G ++ AI+ V+
Sbjct: 258 GQPPTLDPITGKPEPRVEWVEGVAIMAAIVIVV 290
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 19 NITEIYRTSYKTDYQLIPKREETRLLESINTIGNKADV 132
N E+Y K++ P E + +I G++ADV
Sbjct: 362 NSIEVYALDVKSEGSAAPLTERASRISAIEIPGHRADV 399
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/40 (20%), Positives = 19/40 (47%)
Frame = +1
Query: 109 TIGNKADVILPNSIEMPPLMKLFIIKDHEKKGLETSKDFM 228
T+G +V+ + ++P + + + H +E DF+
Sbjct: 887 TVGKNPEVVRKSPAKLPNIANIMTVNGHRYSVVELPDDFL 926
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 24.2 bits (50), Expect = 9.3
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 52 TDY-QLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFIIKDHEKKGLETSKDF 225
TD+ IPK R L+ I GN DV+ ++E K I D+ KK L K F
Sbjct: 374 TDFTSRIPKIGPVRALKLIRYYGNAFDVLKALNVE----EKYIIPTDYIKKFLTAKKLF 428
>SPBC146.10 |mug57||meiotically upregulated gene
Mug57|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 34 YRTSYKTDYQLIPKREETRLLESINTIGNK 123
Y+T TD +I K EE + ESI+ + K
Sbjct: 139 YKTIDGTDVHVIKKEEEIYINESIHVLCRK 168
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 24.2 bits (50), Expect = 9.3
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +1
Query: 325 QSVPPCMMVSLYNNKL 372
QS+PP ++S+Y N++
Sbjct: 232 QSMPPARLISIYQNQI 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,719,760
Number of Sequences: 5004
Number of extensions: 32927
Number of successful extensions: 70
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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