Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0861
         (446 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.3  

>SB_21191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 85  TRLLESINTIGNKADVILPNSIEMPPLMKLFIIKDHEKKGLETSKDFM 228
           T L  + + IG   DVI    +EM    K+FI +D    GL  +K  M
Sbjct: 94  TSLANANDLIGALKDVIHETKVEMCKPGKVFIARDTRPSGLAFTKALM 141


>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 30/88 (34%), Positives = 43/88 (48%)
 Frame = +1

Query: 4   HEKLPNITEIYRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFII 183
           H    N T I++ SYKTDY L  KR     LE++ TI NK    L     +  ++  F  
Sbjct: 610 HSNDDNKTTIFQ-SYKTDYSLKVKR-----LEAVLTI-NKVKTSLEGEYSI-KIVGGFNG 661

Query: 184 KDHEKKGLETSKDFMMPLSYNQSPIEQT 267
             ++ +G  TS   ++PLS   SP  +T
Sbjct: 662 TTYQSRG--TSLKVLVPLSIT-SPANKT 686


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,948,795
Number of Sequences: 59808
Number of extensions: 211473
Number of successful extensions: 361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)