Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0861
         (446 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2709|AAF49483.2|  188|Drosophila melanogaster CG13037-P...    51   8e-07
BT012484-1|AAS93755.1|  409|Drosophila melanogaster LP08122p pro...    30   1.2  
AE014296-2964|AAF49302.2|  409|Drosophila melanogaster CG32187-P...    30   1.2  
AY058795-1|AAL14024.1| 1412|Drosophila melanogaster SD10676p pro...    28   6.6  
AF327844-1|AAK50882.1| 1412|Drosophila melanogaster bicoid mRNA ...    28   6.6  
AE014134-2933|AAF53668.2| 1412|Drosophila melanogaster CG10302-P...    28   6.6  
X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    27   8.7  
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    27   8.7  

>AE014296-2709|AAF49483.2|  188|Drosophila melanogaster CG13037-PA
           protein.
          Length = 188

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 23/58 (39%), Positives = 36/58 (62%)
 Frame = +1

Query: 16  PNITEIYRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFIIKD 189
           P   EIY TSYK DY+L+P+ +E + L +   +     VILP  IE+PPL++  + ++
Sbjct: 82  PKPVEIYSTSYKADYELVPQDQEAKYLNNKKKV---EPVILPTKIELPPLLRELVSEE 136



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
 Frame = +3

Query: 255 NRTNKIAKANEQPTIKFTMGLG--KPVSPSLYDGI 353
           N+  ++AK  E+PT+ F +G+G  KPVS  LY+G+
Sbjct: 153 NKMARLAKDGEKPTVNFALGVGQPKPVSAKLYEGL 187


>BT012484-1|AAS93755.1|  409|Drosophila melanogaster LP08122p
           protein.
          Length = 409

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 30/100 (30%), Positives = 46/100 (46%)
 Frame = +1

Query: 10  KLPNITEIYRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFIIKD 189
           K PN     R++ +  YQ + K    R L  I T+  + DV L +     P++ L +I +
Sbjct: 184 KWPNSLAAQRSTLQ-GYQRLDKLRCFRELFGIITL-RRLDVFLESEHADVPVV-LQLICN 240

Query: 190 HEKKGLETSKDFMMPLSYNQSPIEQTR*QKPMNNPQ*SLL 309
            E+K ++   +  M  S+  SPI QT    P   P  S L
Sbjct: 241 AERKIVDCYVELAMEYSFEDSPIGQTLALNPRTMPAGSYL 280


>AE014296-2964|AAF49302.2|  409|Drosophila melanogaster CG32187-PA
           protein.
          Length = 409

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 30/100 (30%), Positives = 46/100 (46%)
 Frame = +1

Query: 10  KLPNITEIYRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFIIKD 189
           K PN     R++ +  YQ + K    R L  I T+  + DV L +     P++ L +I +
Sbjct: 184 KWPNSLAAQRSTLQ-GYQRLDKLRCFRELFGIITL-RRLDVFLESEHADVPVV-LQLICN 240

Query: 190 HEKKGLETSKDFMMPLSYNQSPIEQTR*QKPMNNPQ*SLL 309
            E+K ++   +  M  S+  SPI QT    P   P  S L
Sbjct: 241 AERKIVDCYVELAMEYSFEDSPIGQTLALNPRTMPAGSYL 280


>AY058795-1|AAL14024.1| 1412|Drosophila melanogaster SD10676p
           protein.
          Length = 1412

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 124 ADVILPNSIEMPPLMKLFIIKDHEKKGLETSKDFMMPLSYNQSP 255
           A+ I+P ++ + PL+K+ ++KD   K +E  ++      Y  +P
Sbjct: 818 ANYIVPTNVLLGPLIKVHLVKDDIPKAIEAFEEICQ--KYKSTP 859


>AF327844-1|AAK50882.1| 1412|Drosophila melanogaster bicoid mRNA
           stability factor protein.
          Length = 1412

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 124 ADVILPNSIEMPPLMKLFIIKDHEKKGLETSKDFMMPLSYNQSP 255
           A+ I+P ++ + PL+K+ ++KD   K +E  ++      Y  +P
Sbjct: 818 ANYIVPTNVLLGPLIKVHLVKDDIPKAIEAFEEICQ--KYKSTP 859


>AE014134-2933|AAF53668.2| 1412|Drosophila melanogaster CG10302-PA
           protein.
          Length = 1412

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 124 ADVILPNSIEMPPLMKLFIIKDHEKKGLETSKDFMMPLSYNQSP 255
           A+ I+P ++ + PL+K+ ++KD   K +E  ++      Y  +P
Sbjct: 818 ANYIVPTNVLLGPLIKVHLVKDDIPKAIEAFEEICQ--KYKSTP 859


>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
           D.melanogaster white-one mutant DNA with Doc retroposon,
           inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 11  NYPILQKYIAHHTKLIISLSPKE 79
           N+P  QKY+  H +L  +LS KE
Sbjct: 240 NWPRYQKYVCSHIELTTALSTKE 262


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p
           protein.
          Length = 888

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 11  NYPILQKYIAHHTKLIISLSPKE 79
           N+P  QKY+  H +L  +LS KE
Sbjct: 240 NWPRYQKYVCSHIELTTALSTKE 262


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,531,612
Number of Sequences: 53049
Number of extensions: 327349
Number of successful extensions: 496
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1435027293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)