Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0861
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34802-2|CAA84334.2|  228|Caenorhabditis elegans Hypothetical pr...    34   0.054
U53154-12|AAC25847.2|  380|Caenorhabditis elegans Serpentine rec...    27   6.2  
Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AC024787-1|AAF60607.2|  469|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z34802-2|CAA84334.2|  228|Caenorhabditis elegans Hypothetical
           protein M88.2 protein.
          Length = 228

 Score = 33.9 bits (74), Expect = 0.054
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 22  ITEIYRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFIIKDHEKK 201
           + E  +   ++D+QL+ K +E     S   +    D++LP+S  +PPL      K   K 
Sbjct: 84  VYEFSKDLNRSDWQLVHKHQEKSYTSSTTPM---QDLVLPDSFPLPPLQVHLSQKSARKN 140

Query: 202 GL-ETSKDFMMPLSYNQSP 255
           GL E +     PL+ +  P
Sbjct: 141 GLDEKTVSRRAPLTLSVDP 159


>U53154-12|AAC25847.2|  380|Caenorhabditis elegans Serpentine
           receptor, class w protein127 protein.
          Length = 380

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 34  YRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFIIKD 189
           Y  +Y  DY  +  +  +RLL+  N +   A  I+P S+   PL+ +F+I++
Sbjct: 199 YVKAYFRDYTQLFLKNNSRLLKLWNFVNALASFIIP-SVAF-PLVTIFLIRE 248


>Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 76  REETRLLES--INTIGNKADVILPNSIEMPPLMKLF 177
           RE+  LL+S  IN I N++ V  P +IE+PP  KLF
Sbjct: 199 REQLELLDSGKINEI-NQSKV--PTTIELPPNCKLF 231


>Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 76  REETRLLES--INTIGNKADVILPNSIEMPPLMKLF 177
           RE+  LL+S  IN I N++ V  P +IE+PP  KLF
Sbjct: 199 REQLELLDSGKINEI-NQSKV--PTTIELPPNCKLF 231


>AC024787-1|AAF60607.2|  469|Caenorhabditis elegans Hypothetical
           protein Y46C8AR.1 protein.
          Length = 469

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 135 YDICLISNGVYRL*QPSFFS 76
           YD+C ++NG+Y + + S FS
Sbjct: 322 YDLCSLTNGIYSIGRDSSFS 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,321,786
Number of Sequences: 27780
Number of extensions: 180182
Number of successful extensions: 441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)