Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0861
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12540.1 68417.m01979 expressed protein                             27   5.8  
At1g30650.1 68414.m03748 WRKY family transcription factor contai...    27   5.8  
At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMP...    27   5.8  
At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMP...    27   5.8  
At5g25800.1 68418.m03062 exonuclease family protein contains exo...    27   7.6  
At3g26460.1 68416.m03299 major latex protein-related / MLP-relat...    27   7.6  

>At4g12540.1 68417.m01979 expressed protein 
          Length = 461

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 52  TDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLM 168
           +D+QL+P+ +E + L S N   +  DV  P   +  PL+
Sbjct: 109 SDFQLLPEDQEEQSLMSTNEEEDLFDVESPEPTQFEPLV 147


>At1g30650.1 68414.m03748 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 430

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +1

Query: 37  RTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFIIKDHEKKGLE 210
           R+S  +     P +  T  + S ++IG++  + LP+S   PP +    IKD     +E
Sbjct: 288 RSSTSSSSNPNPSKPSTANVNS-SSIGSQNTIYLPSSTTPPPTLSSSAIKDERGDDME 344


>At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMPA4)
           similar to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 538

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
 Frame = +1

Query: 1   RHEKLPNITEIYRTSYKTDYQLIPKREETRLLESINTIGNKAD-----VILPNSIEMPPL 165
           R  +  N+ EI +   K +  L+ KR E  +L+    +G   D       +   +E  P+
Sbjct: 26  RRRREDNLVEIRKN--KREDSLLKKRREGMMLQQQLPLGAGLDGPQTAAAVEKRLEGIPM 83

Query: 166 MKLFIIKDHEKKGLETSKDFMMPLSYNQSP 255
           M   +  D  +  LE +  F   LS  +SP
Sbjct: 84  MVQGVYSDDPQAQLEATTQFRKLLSIERSP 113


>At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMPA4)
           similar to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 538

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
 Frame = +1

Query: 1   RHEKLPNITEIYRTSYKTDYQLIPKREETRLLESINTIGNKAD-----VILPNSIEMPPL 165
           R  +  N+ EI +   K +  L+ KR E  +L+    +G   D       +   +E  P+
Sbjct: 26  RRRREDNLVEIRKN--KREDSLLKKRREGMMLQQQLPLGAGLDGPQTAAAVEKRLEGIPM 83

Query: 166 MKLFIIKDHEKKGLETSKDFMMPLSYNQSP 255
           M   +  D  +  LE +  F   LS  +SP
Sbjct: 84  MVQGVYSDDPQAQLEATTQFRKLLSIERSP 113


>At5g25800.1 68418.m03062 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 567

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +1

Query: 79  EETRLLESINTIGNKADVILPNSIEMPPLMKL-FIIKDHEKKGLETSKDFMMPLSY---N 246
           +E R +++I T   +    + +S+E PPL+          K  +E +KD   P+SY   +
Sbjct: 125 DEMRTIDTILTCKGRKKKTVTSSVEPPPLVSSPEACNLMGKSFVELTKDIPFPVSYYTLS 184

Query: 247 QSPIEQ 264
           Q  +EQ
Sbjct: 185 QKEMEQ 190


>At3g26460.1 68416.m03299 major latex protein-related / MLP-related
           low similarity to major latex protein {Papaver
           somniferum}[GI:294060] contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 152

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 46  YKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFII--KDHEKK 201
           Y+ D+Q IPK EE  + + I  I  K +   P       L+K  +I  +DH  K
Sbjct: 99  YEIDFQFIPKSEEDCICK-ITMIWEKRNDDFPEPSSYMQLLKSMVIDMEDHVLK 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,634,627
Number of Sequences: 28952
Number of extensions: 162853
Number of successful extensions: 338
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)