Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0860
         (660 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8EV67 Cluster: Putative uncharacterized protein MYPE70...    40   0.053
UniRef50_A6DFB7 Cluster: Probable sulfatase atsG; n=3; Lentispha...    33   4.6  
UniRef50_Q8LWY7 Cluster: Cytochrome c oxidase subunit 2; n=13; E...    33   8.0  

>UniRef50_Q8EV67 Cluster: Putative uncharacterized protein MYPE7010;
           n=2; Mycoplasma penetrans|Rep: Putative uncharacterized
           protein MYPE7010 - Mycoplasma penetrans
          Length = 1287

 Score = 39.9 bits (89), Expect = 0.053
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = -2

Query: 590 LKSHRNAIASWGHSKATIYKVNIVMRWVRDK*NSTELQFNTVISTINLKHSTNTLKFSI 414
           + S  NA AS G + A + K+N + R+V +  + + LQF T +S +N K  T  L + +
Sbjct: 770 VNSAMNAFASEGSNLANLVKINYLKRYVSNYFDESTLQFKTGLSQVNNKDLTENLNYGL 828


>UniRef50_A6DFB7 Cluster: Probable sulfatase atsG; n=3; Lentisphaera
           araneosa HTCC2155|Rep: Probable sulfatase atsG -
           Lentisphaera araneosa HTCC2155
          Length = 447

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 263 DTQLMWNILDNYRDVVSDIKA-LQRWHAVSQ 352
           D Q + N+ D Y D+V+D+K+ +Q WH V+Q
Sbjct: 410 DPQELNNLSDQYPDIVADLKSKIQSWHPVNQ 440


>UniRef50_Q8LWY7 Cluster: Cytochrome c oxidase subunit 2; n=13;
           Eukaryota|Rep: Cytochrome c oxidase subunit 2 -
           Laminaria digitata
          Length = 1280

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = -1

Query: 207 LLDPSIFVRLFGDRWRYSYRCNNINRK*YVVV*KEHLNTITITKSVQSTKTNLI 46
           ++DPS+ +++ G +W +SY C++        + K++LN + ++        +LI
Sbjct: 123 VIDPSLTIKVVGHQWYWSYECSDFEVS--PTIKKDNLNQVEVSYKALKDMADLI 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,499,372
Number of Sequences: 1657284
Number of extensions: 11245996
Number of successful extensions: 25156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25146
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)