Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0860
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.4  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    26   4.2  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   5.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.5  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   7.3  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   9.7  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 105  LFIPLRIIFDLYCYIGKSNAIYRRIAERISKDLVASRTL 221
            LFI L II  +  ++G+S   +R   +R + +LV+ R L
Sbjct: 1101 LFIDLVIILPIAVFMGRSRPYHRLAHKRPTANLVSKRIL 1139


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 316 YKSV-AEMARSQSVIGTTRSEIANGSPEAKAQKGIENFKVFVECFKLI 456
           YK+  A +AR Q+    T+S I +   E   Q+ IEN +   + FK+I
Sbjct: 319 YKTCQAVIARDQTTATETKSAIEDRQREEAKQREIENVQWKPKYFKMI 366


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 483  FGRILFIPNPAHNNINF--VDSRFRMAPG-SDSISMGF 587
            F + L + NPAHN++ F   DS   M P  S+S+ M F
Sbjct: 1579 FVKKLALANPAHNDLKFCETDSVTSMEPTVSESVEMLF 1616


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 494  NSTELQFNTVISTINLKHSTNTLKFSIP 411
            N+TEL  +T   + NL+++TN LK + P
Sbjct: 1668 NNTELNEDTSAVSRNLENATNDLKETFP 1695


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 524 IVMRWVRDK*NSTELQFNTVISTINLKH--STNTLKFSIP 411
           ++ +WV D    T + ++  I   N+ +  S+N+LKFSIP
Sbjct: 483 LISKWVSDSIIETSI-YDAWIQFRNIPYFPSSNSLKFSIP 521


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 120 RIIFDLYCYIGKSNAIYRRIAERISKDLVASRTLGKYNAIYCQIAKH 260
           RI+  LY YIGK   +Y + AE+I          G    + C I  H
Sbjct: 199 RIVEALYTYIGKPKNMYSK-AEKIGISFAGGYMAG----VLCAIISH 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,857
Number of Sequences: 5004
Number of extensions: 51057
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)