Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0860
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      29   2.9  
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    29   2.9  
Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 221 REVQRHLLSDSETHDTQLMWNILDNYRDVVSDIKALQRWHA 343
           +E Q+ L+ + E  DT +  N LD+Y+ +    +AL+ WH+
Sbjct: 540 KEFQKWLVDNDEELDT-IDVNELDSYKTIEDRRRALKAWHS 579


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
           related protein 1 protein.
          Length = 1359

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 221 REVQRHLLSDSETHDTQLMWNILDNYRDVVSDIKALQRWHA 343
           +E Q+ L+ + E  DT +  N LD+Y+ +    +AL+ WH+
Sbjct: 540 KEFQKWLVDNDEELDT-IDVNELDSYKTIEDRRRALKAWHS 579


>Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical
           protein ZK792.8 protein.
          Length = 521

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 249 SDNRWRCTSRAF*MLLDPSIFVRLFGDRWRYSYR 148
           +D  W C  R   M++  +I V  FG  WR++ R
Sbjct: 197 TDCGWGCMIRTTQMMVAQAIMVNRFGRDWRFTRR 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,920,746
Number of Sequences: 27780
Number of extensions: 273860
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)