Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0860
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18150.1 68417.m02697 hypothetical protein                          29   3.6  
At2g37890.1 68415.m04651 mitochondrial substrate carrier family ...    28   6.3  
At2g23530.1 68415.m02808 expressed protein ; expression supporte...    28   6.3  

>At4g18150.1 68417.m02697 hypothetical protein 
          Length = 762

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 379 ANGSPEAKAQKGIENFKVFVECFKLIVLITVLNCN 483
           ANG   A ++K I++ K  VEC +L +   ++ C+
Sbjct: 11  ANGGVPASSRKVIQDLKEIVECSELEIYAMLVECD 45


>At2g37890.1 68415.m04651 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 337

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 DLVASRTLGKYNAIYCQIAKHTILSLC 278
           DLV +R   + NAIY Q  +HT  ++C
Sbjct: 170 DLVRTRLAAQRNAIYYQGIEHTFRTIC 196


>At2g23530.1 68415.m02808 expressed protein ; expression supported
           by MPSS
          Length = 555

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 349 SVIGTTRSEIANGSPEAKAQKGIENFKVFVECFKLIVLITVLNCNSVEFYLSRTQR 516
           S I      I +G   A+  +G E+F + ++CF+    I  L   SV  YL +T+R
Sbjct: 210 SAIAVCAGIIKDGFQLARFTEGAEDFFLSLDCFQ----IAALGYKSVAHYLIQTKR 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,966,482
Number of Sequences: 28952
Number of extensions: 247936
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)