Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0859
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...   130   1e-31
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    28   1.1  
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    27   3.4  
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ...    26   5.9  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    26   5.9  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   7.8  

>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score =  130 bits (315), Expect = 1e-31
 Identities = 63/111 (56%), Positives = 77/111 (69%)
 Frame = +1

Query: 175 KTKA*RESWKMGCPHP*SESSSGRRSIKVLKSGKSKRKAWXRMVTKVTFVGEXFTRKPPK 354
           K K   ++ K   P P     +     KV+++GKSK+ +W RM+TK TFVG+ FTR+P K
Sbjct: 107 KQKRKEKAAKYSVPLPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVK 166

Query: 355 FERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKG 507
           +ERFIRPMALR KKA+VTH EL  T  LPIIGVKKNP S  YT LGV+TKG
Sbjct: 167 YERFIRPMALRQKKANVTHKELGVTMQLPIIGVKKNPQSPTYTQLGVLTKG 217



 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 35/43 (81%), Positives = 39/43 (90%)
 Frame = +3

Query: 504 G*VIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLL 632
           G VIEVN+SELGLVT  GKVVWGKYAQ+TNNPE DGC+NA+LL
Sbjct: 217 GTVIEVNVSELGLVTSGGKVVWGKYAQITNNPELDGCVNALLL 259



 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 34/72 (47%), Positives = 50/72 (69%)
 Frame = +2

Query: 44  EKENQSARREECQTEHREGRXSALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIP 223
           E+ N + R  + QT+       A+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP+P
Sbjct: 69  EERNATQRGSDAQTQ------GAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVPLP 122

Query: 224 KVRAQADAEVSK 259
           +VR  A+ E+ K
Sbjct: 123 QVRGVAEEEMFK 134



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +3

Query: 3   KYSXKERRNEKIQMKKKIKAHEEKNVKQ 86
           K   ++RR EKIQMKK IK HEE+N  Q
Sbjct: 48  KLYQEKRRKEKIQMKKTIKQHEERNATQ 75


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 373 PMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 495
           PM   F +    HP  K  FC+P + ++  P       LGV
Sbjct: 287 PMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADLGV 327


>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 98  GRXSALPVYLLDRDVQSRAKVLSNMIKQKRKEK 196
           GR S    YL+++++   A V SN++K+   EK
Sbjct: 29  GRSSYKSSYLVNQNLMDEALVKSNLLKEYNSEK 61


>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Pet191
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 85

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 18  ERRNEKIQMKKKIKAHEEKNVKQNTEKVAEV 110
           E + + + M K+ +   EKN  Q+TEK + V
Sbjct: 52  ECKRQMLDMTKRYRIAPEKNTDQDTEKPSNV 82


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 683 EIGSHLDFSPGLNNKLDQQHSINA 612
           E   H DFS G  N+LD++ + NA
Sbjct: 77  ETSDHEDFSGGSENELDEETTKNA 100


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 68  REECQTEHREGRXSALPVYLLDRDVQSRAKVLSNMIKQKRKEK 196
           RE   +  +E R +    Y L   +Q R +  S+M  QK+K+K
Sbjct: 201 REPISSPEQELRENVRDPYSLLSKIQPRVRWQSHMESQKKKQK 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,360
Number of Sequences: 5004
Number of extensions: 48960
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)