Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0859
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960...   136   1e-32
04_01_0342 - 4457825-4460863                                           29   3.5  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    29   3.5  
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491...    29   4.6  
11_06_0284 + 21909758-21913645                                         28   6.0  

>07_03_1651 -
           28395369-28395436,28395524-28395575,28395857-28396092,
           28396362-28396419,28396509-28396577,28396686-28396791,
           28397104-28397171,28397266-28397385,28398144-28398231,
           28399433-28399534,28399699-28399757,28399866-28400003,
           28400222-28400473,28400508-28400593,28401061-28401165,
           28402351-28402516
          Length = 590

 Score =  136 bits (330), Expect = 1e-32
 Identities = 66/111 (59%), Positives = 77/111 (69%)
 Frame = +1

Query: 175 KTKA*RESWKMGCPHP*SESSSGRRSIKVLKSGKSKRKAWXRMVTKVTFVGEXFTRKPPK 354
           K K   ++ K   P P     +     KVL++GK K K W RMVTK TFVG  FTRKPPK
Sbjct: 437 KQKRMEKAGKWEVPLPKVRPVAEEEMFKVLRTGKRKTKQWKRMVTKATFVGPGFTRKPPK 496

Query: 355 FERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKG 507
           +ERFIRP  LRF KAHVTHPELK TF L II VKKNP+ QMY++LGV+T+G
Sbjct: 497 YERFIRPTGLRFTKAHVTHPELKCTFNLDIISVKKNPNGQMYSTLGVLTRG 547



 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 40/44 (90%), Positives = 42/44 (95%)
 Frame = +3

Query: 504 G*VIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 635
           G +IEVN+SELGLVT AGKVVWGKYAQVTNNPENDGCINAVLLV
Sbjct: 547 GTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 590



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 36/50 (72%), Positives = 40/50 (80%)
 Frame = +2

Query: 110 ALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVSK 259
           ALP YLLDRD   RAKVLSN IKQKR EKAGKW+VP+PKVR  A+ E+ K
Sbjct: 415 ALPPYLLDRDQTQRAKVLSNTIKQKRMEKAGKWEVPLPKVRPVAEEEMFK 464



 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 15  KERRNEKIQMKKKIKAHEEKNVKQNTEKVAE 107
           K+R  EK QMKK +K H+E   +Q  + V E
Sbjct: 383 KKRYAEKAQMKKTLKMHDESTSRQKVDDVQE 413


>04_01_0342 - 4457825-4460863
          Length = 1012

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -1

Query: 587  DLSVFTPHNFTSLRDKTQ--LRNINFNHLPLVMTPKLVYICELGFFLTPIIGKQKVAFSS 414
            +L    P    +LR++ +  LR     H+ L   PKL  ICE+   + P++   +V    
Sbjct: 896  ELRQIFPVEAVALREQPRGVLRFPKLKHIHLHDVPKLHQICEISRMVAPVLETIRV---R 952

Query: 413  GCVTWAFLNLSAI 375
            GC  WA   + AI
Sbjct: 953  GC--WALKRIPAI 963


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -1

Query: 686  DEIGSHLDFSPGLNNKLDQQHSINAAIILWIIRDLSVFTP 567
            DE G     S GL+ +LD++   NA+ ++ +IR L VFTP
Sbjct: 918  DESGFLSATSFGLS-RLDKERIYNASAVVVLIRSLLVFTP 956


>12_02_1167 +
           26647293-26648356,26648493-26648577,26649129-26649191,
           26649381-26649443,26649987-26650070,26650229-26650783
          Length = 637

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +2

Query: 32  KDSDEKENQSARREECQTEHREGRXSALPVYLLDRDVQSR---AKVLSNMIKQKRKEKAG 202
           K+ +E+E + +  +  Q E  EG   A P  ++DR   +R   A+     I + R  +AG
Sbjct: 185 KEEEEEETKLSAPKAEQLEEEEGAAVAAPSGMIDRWKATRYATAEASLLAIMRARGARAG 244

Query: 203 KWDVPIPKVRAQADAEV 253
           K  VP   +R +A A +
Sbjct: 245 K-PVPRGALREEARAHI 260


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 35  DSDEKENQSARREECQTEHREGR 103
           +  EKE +  R+EE Q E +EGR
Sbjct: 480 EKQEKEKEEERKEEGQNEEKEGR 502


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,827,237
Number of Sequences: 37544
Number of extensions: 289227
Number of successful extensions: 701
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)