Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0859
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42723| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   4e-17
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)          29   3.5  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 29   4.7  
SB_33094| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_28488| Best HMM Match : PAX (HMM E-Value=0)                         28   8.1  
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)                    28   8.1  

>SB_42723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
 Frame = +2

Query: 71  EECQTEHREGRX---SALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQA 241
           EE +T+ R        A+P YLLDR+ QSRAKVLSNM+KQKRKEKAGKWDVP+PKVRA  
Sbjct: 130 EEKKTKARNNEKVPEGAVPAYLLDREGQSRAKVLSNMVKQKRKEKAGKWDVPLPKVRAVG 189

Query: 242 DAEVSK 259
           + EV K
Sbjct: 190 EDEVFK 195



 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 37/41 (90%), Positives = 39/41 (95%)
 Frame = +3

Query: 513 IEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 635
           + VN+SELGLVTQ GKVVWGKYAQVTNNPENDGCINAVLLV
Sbjct: 272 VTVNVSELGLVTQGGKVVWGKYAQVTNNPENDGCINAVLLV 312



 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 35/68 (51%), Positives = 44/68 (64%)
 Frame = +1

Query: 175 KTKA*RESWKMGCPHP*SESSSGRRSIKVLKSGKSKRKAWXRMVTKVTFVGEXFTRKPPK 354
           K K   ++ K   P P   +       KV+K+GK++RK W RMVTK  FVG+ FTRKPPK
Sbjct: 168 KQKRKEKAGKWDVPLPKVRAVGEDEVFKVIKTGKTRRKGWKRMVTKACFVGDGFTRKPPK 227

Query: 355 FERFIRPM 378
           +ERFIRPM
Sbjct: 228 YERFIRPM 235



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 3   KYSXKERRNEKIQMKKKIKAHEEKNVK-QNTEKVAE 107
           K   K+R  EK+QMKK +K HEEK  K +N EKV E
Sbjct: 109 KLYNKKRHAEKVQMKKTMKLHEEKKTKARNNEKVPE 144


>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
          Length = 966

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +2

Query: 56  QSARREECQTEHREGRXSALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRA 235
           + AR    + E    R +   +  + +DV+ R K +   +K   KE  G+ D+P+P    
Sbjct: 659 EKARSGIVEAEEGMERVNPEKLETMVKDVRKRTKEIVKSLKHFLKETKGEVDIPLPPAPE 718

Query: 236 QADAE 250
            ++ E
Sbjct: 719 VSEPE 723


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 53  NQSARREECQTEHREGRXSALPVYLLDRDVQSRAK 157
           +Q AR+ +  T+  E +   +  YLLDRD+Q  AK
Sbjct: 410 HQLARQVKDSTQRAEQKMDIVITYLLDRDLQKFAK 444


>SB_33094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +2

Query: 41  DEKENQSARREECQTEHREGRXSALPVYL----LDRDVQSRAKVLSNMIKQKRKEKA 199
           +E+E +  +REE   + R  R + L  Y     LD+  +  A++   M K K KEKA
Sbjct: 15  EEEEARRQKREELFEKERAERLARLGDYKAQRKLDKAKREEARLKEEMQKAKEKEKA 71


>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
          Length = 551

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -1

Query: 524 INFNHLPLVMTPKLVYICELGFFLTPIIGKQKVAFSSGCVTWAFLNLSAIGLMNRSNLGG 345
           IN   LPLV+  +++ + +LG  + P    +++  S GCV+         G +    + G
Sbjct: 20  INGRPLPLVLRKQIIELAQLG--VRPCDISRRLRVSHGCVSKILYRFQQTGSIEPGAIAG 77

Query: 344 LRVXFSPTNVT 312
                +P NVT
Sbjct: 78  ---SSTPRNVT 85


>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
          Length = 591

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 32  KDSDEKENQSARREECQTEHREGRXSALPVYLLDRDVQSRAKVLSNMIK---QKRKEK 196
           K++D+++ + AR+EE +   REG          +R V++R K      K   QKRKE+
Sbjct: 375 KEADDRQREEARKEEEEKRKREGEVKKRKEE-EERLVEARRKEQEEKRKLEEQKRKEE 431


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,619,861
Number of Sequences: 59808
Number of extensions: 341410
Number of successful extensions: 976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)