Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0859
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical pr... 161 4e-40
AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical ... 161 4e-40
Z92777-3|CAB07169.1| 351|Caenorhabditis elegans Hypothetical pr... 33 0.25
Z75530-2|CAA99795.2| 351|Caenorhabditis elegans Hypothetical pr... 31 0.58
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 2.4
AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical... 29 3.1
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 28 7.2
Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p... 28 7.2
>Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 161 bits (391), Expect = 4e-40
Identities = 78/116 (67%), Positives = 90/116 (77%)
Frame = +1
Query: 175 KTKA*RESWKMGCPHP*SESSSGRRSIKVLKSGKSKRKAWXRMVTKVTFVGEXFTRKPPK 354
K K +++ K P P + S + KV+K+GK+ RK W RMVTKVTFVGE FTRKP K
Sbjct: 106 KQKRKQKAGKFNVPIPQVRAVSDAEAFKVVKTGKTNRKGWKRMVTKVTFVGESFTRKPAK 165
Query: 355 FERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGK*LKL 522
FERFIRPM LRFKKAHVTHPEL+ TF LPI+GVKKNPSSQMYTSLGVITKG L++
Sbjct: 166 FERFIRPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPSSQMYTSLGVITKGTILEV 221
Score = 85.4 bits (202), Expect = 3e-17
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = +3
Query: 504 G*VIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 635
G ++EVN+SELG+VTQ GKVVWGK+AQVTNNPENDGCINAVLL+
Sbjct: 216 GTILEVNVSELGMVTQGGKVVWGKFAQVTNNPENDGCINAVLLI 259
Score = 72.1 bits (169), Expect = 3e-13
Identities = 34/50 (68%), Positives = 41/50 (82%)
Frame = +2
Query: 110 ALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVSK 259
A+P YLLDR Q+ VLSNMIKQKRK+KAGK++VPIP+VRA +DAE K
Sbjct: 84 AVPAYLLDRQQQTSGTVLSNMIKQKRKQKAGKFNVPIPQVRAVSDAEAFK 133
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 3 KYSXKERRNEKIQMKKKIKAHEEKNVKQNTEK 98
K K+R +EK++M+K +K HEEK+ K E+
Sbjct: 48 KLYHKKRYSEKVEMRKLLKQHEEKDQKNTVEQ 79
>AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 161 bits (391), Expect = 4e-40
Identities = 78/116 (67%), Positives = 90/116 (77%)
Frame = +1
Query: 175 KTKA*RESWKMGCPHP*SESSSGRRSIKVLKSGKSKRKAWXRMVTKVTFVGEXFTRKPPK 354
K K +++ K P P + S + KV+K+GK+ RK W RMVTKVTFVGE FTRKP K
Sbjct: 106 KQKRKQKAGKFNVPIPQVRAVSDAEAFKVVKTGKTNRKGWKRMVTKVTFVGESFTRKPAK 165
Query: 355 FERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGK*LKL 522
FERFIRPM LRFKKAHVTHPEL+ TF LPI+GVKKNPSSQMYTSLGVITKG L++
Sbjct: 166 FERFIRPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPSSQMYTSLGVITKGTILEV 221
Score = 85.4 bits (202), Expect = 3e-17
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = +3
Query: 504 G*VIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 635
G ++EVN+SELG+VTQ GKVVWGK+AQVTNNPENDGCINAVLL+
Sbjct: 216 GTILEVNVSELGMVTQGGKVVWGKFAQVTNNPENDGCINAVLLI 259
Score = 72.1 bits (169), Expect = 3e-13
Identities = 34/50 (68%), Positives = 41/50 (82%)
Frame = +2
Query: 110 ALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVSK 259
A+P YLLDR Q+ VLSNMIKQKRK+KAGK++VPIP+VRA +DAE K
Sbjct: 84 AVPAYLLDRQQQTSGTVLSNMIKQKRKQKAGKFNVPIPQVRAVSDAEAFK 133
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 3 KYSXKERRNEKIQMKKKIKAHEEKNVKQNTEK 98
K K+R +EK++M+K +K HEEK+ K E+
Sbjct: 48 KLYHKKRYSEKVEMRKLLKQHEEKDQKNTVEQ 79
>Z92777-3|CAB07169.1| 351|Caenorhabditis elegans Hypothetical
protein C17H1.5 protein.
Length = 351
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 20 TPQ*KDSDEKENQSARREECQTEHREGRXSALPVYLLDRDVQSRAKVLS-NMIKQKRKEK 196
T + K SDE+E AR E + +H E +R A S +K+K K +
Sbjct: 30 TVEDKISDEREKHVARMSEKEKKHHENMLRLTNSSAAERKSAEEAHRKSVEQLKEKHKNE 89
Query: 197 AGKWDVPIPKVRAQADAEVSK 259
K + I +++ + + +V K
Sbjct: 90 TEKLETQIKEIKEKGEEDVRK 110
>Z75530-2|CAA99795.2| 351|Caenorhabditis elegans Hypothetical
protein C47E8.4 protein.
Length = 351
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 18 ERRNEKIQMKKKIKAHEEKNVKQNTEKVAEVXCLFIYWTG 137
++ E+ KKK E VKQ+ EK E+ + YW G
Sbjct: 177 DKEREEFLRKKKESLAAEWRVKQDAEKNEEITVAYAYWDG 216
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 32 KDSDEKENQSAR--REECQTEHREGRXSALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGK 205
+D EK+ Q R R++ Q ++ G S PVY + S ++ ++R E +
Sbjct: 676 RDEWEKQRQKRREERDQDQDDNDFGGGSFTPVYDFEGPSDSNKNEEKDVDMRERVETRSE 735
Query: 206 WDVPI 220
W+ PI
Sbjct: 736 WEFPI 740
>AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical
protein W08E12.1 protein.
Length = 228
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 32 KDSDEKENQSARREECQTEHREGRXSALPV 121
K+ D N + E+CQ EH G A+P+
Sbjct: 108 KECDHIMNSAGDCEKCQVEHENGAQEAIPI 137
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +3
Query: 3 KYSXKERRNEKIQMKKKIKAHEEK--NVKQNTEKVAE 107
K KE+ EK + K+KIK E+K ++++ TE+ +E
Sbjct: 391 KEKDKEKEREKRKSKEKIKEKEKKMGSLEKTTERTSE 427
>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 128 LDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQAD 244
++R++ RAK + + ++K G+WD P A +D
Sbjct: 169 VERELADRAKAGELHVTGQPEKKKGRWDAEAPSTDASSD 207
>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 128 LDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQAD 244
++R++ RAK + + ++K G+WD P A +D
Sbjct: 169 VERELADRAKAGELHVTGQPEKKKGRWDAEAPSTDASSD 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,016,043
Number of Sequences: 27780
Number of extensions: 270138
Number of successful extensions: 882
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -