Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0859
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06360.1 68418.m00712 ribosomal protein S8e family protein co...   142   3e-34
At1g20400.1 68414.m02544 myosin heavy chain-related                    29   3.8  
At5g25410.1 68418.m03014 expressed protein  contains Pfam profil...    28   5.0  
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si...    28   6.7  
At3g28770.1 68416.m03591 expressed protein                             27   8.8  

>At5g06360.1 68418.m00712 ribosomal protein S8e family protein
           contains Pfam profile PF01201: Ribosomal protein S8e
          Length = 260

 Score =  142 bits (343), Expect = 3e-34
 Identities = 67/111 (60%), Positives = 78/111 (70%)
 Frame = +1

Query: 175 KTKA*RESWKMGCPHP*SESSSGRRSIKVLKSGKSKRKAWXRMVTKVTFVGEXFTRKPPK 354
           K K   ++ K   P P     +     +V++SGK K K W RMVTK TFVG  FTRKPPK
Sbjct: 107 KQKRKEKAGKWEVPLPKVRPVAEDEMFRVIRSGKRKTKQWKRMVTKATFVGPAFTRKPPK 166

Query: 355 FERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKG 507
           +ERFIRP  LRF KAHVTHPELK TFCL IIG+KKNP+  MYTSLGV+T+G
Sbjct: 167 YERFIRPSGLRFTKAHVTHPELKCTFCLEIIGIKKNPNGPMYTSLGVMTRG 217



 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 40/44 (90%), Positives = 42/44 (95%)
 Frame = +3

Query: 504 G*VIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 635
           G +IEVN+SELGLVT AGKVVWGKYAQVTNNPENDGCINAVLLV
Sbjct: 217 GTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 260



 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 39/74 (52%), Positives = 52/74 (70%)
 Frame = +2

Query: 32  KDSDEKENQSARREECQTEHREGRXSALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWD 211
           K + +   +S+ R +     +EG   A+P YLLDR+  +RAKVLSN IKQKRKEKAGKW+
Sbjct: 62  KKTLKMHEESSSRRKADENVQEG---AVPAYLLDREDTTRAKVLSNTIKQKRKEKAGKWE 118

Query: 212 VPIPKVRAQADAEV 253
           VP+PKVR  A+ E+
Sbjct: 119 VPLPKVRPVAEDEM 132


>At1g20400.1 68414.m02544 myosin heavy chain-related
          Length = 944

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +2

Query: 38  SDEKENQSARREECQTEHREGRXSALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 217
           S E+E ++AR E       +GR    P   +DR  ++R K L+   + K+ E + + DVP
Sbjct: 555 SVEEERRTARSEP--PRGHQGRSVVNPGSSVDRSKETREKELATARQGKQLEGSARSDVP 612


>At5g25410.1 68418.m03014 expressed protein  contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 369

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 24  RNEKIQMKKKIKAHEEKNVKQNTE 95
           +N KIQMK  +  HE +N   NT+
Sbjct: 60  KNHKIQMKPSVSRHELRNQTDNTK 83


>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
           similar to beta-glucan-elicitor receptor GI:1752734 from
           [Glycine max]
          Length = 745

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -1

Query: 620 INAAIILWIIRDLSVFTPHNFTSLRDKTQLRNINFNHLPLVMTPKLVYICELGFFLTPII 441
           I+AA + W +++     P +FTS      +         L   PK    C LG  L P++
Sbjct: 578 IHAAKMWWQVKEDDAIYPQDFTSENRVVGVLWSTKRDSGLWFAPKEWKECRLGIQLLPLL 637

Query: 440 GKQKVAFS 417
              +V FS
Sbjct: 638 PVSEVLFS 645


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +3

Query: 15   KERRNEKIQMKKK---IKAHEEKNVKQNTE 95
            KE+++ K Q KKK   +K  EEK +K+N E
Sbjct: 1181 KEKKSSKDQQKKKEKEMKESEEKKLKKNEE 1210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,203,800
Number of Sequences: 28952
Number of extensions: 250908
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)