Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0858
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    31   0.097
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    29   0.69 
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    28   0.91 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.1  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   2.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.1  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   2.8  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   2.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.5  

>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 73  SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM 186
           S   DYHL++ L      E YK QR   GK   LK+++
Sbjct: 31  SHLTDYHLMEKLGEGTFGEVYKSQRRKDGKVYALKRIL 68


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 4   LEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRD-LAGKASTLKK 180
           L+ +  +E +    +  V++ CE  F  +    YL      E  KG+ D L  + + LK+
Sbjct: 170 LDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENTALKE 229

Query: 181 MMDK 192
            +DK
Sbjct: 230 KIDK 233


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 7   EHALKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGEFLDEQYKGQRDL 153
           E   +L   V N I  ++KTC +S ND  ++  DY+S +    + K Q+DL
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKSKFESK-QQDL 798


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +3

Query: 42  QHPGGHQDLREQ---LQRLPPGRLFVRG--IPRRTVQGPTRPRRQGLDPQEDD-GQTRRP 203
           Q PG  Q +  Q   +Q + P R  ++    P+RT   P  P+R G+ PQ     Q   P
Sbjct: 578 QMPGMQQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAP 637

Query: 204 RRVHLRQETPR 236
           +R  ++   P+
Sbjct: 638 QRTGMQPMMPQ 648



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 69  REQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 236
           R  +Q + PG L     P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 516 RTGMQPMMPG-LQQPMAPQRTGMQPMMPQRTGMQPQMTGFQQPMAPQRTGMQPMMPQ 571



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 42  QHPGGHQDLREQLQRLPPGRLFVRGI-PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVH 215
           Q  G    +    Q + P R  ++ + P+RT   P  P+R G+ PQ     Q   P+R  
Sbjct: 648 QRTGMQPQMPGMQQPMAPQRTGMQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTG 707

Query: 216 LRQETPR 236
           ++   P+
Sbjct: 708 MQPMMPQ 714



 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 120 PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 236
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 637 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQ 676



 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 120 PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 236
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 703 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQ 742



 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 120 PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 236
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 560 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQ 599



 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 120 PRRTVQGPTRPRRQGLDPQEDDG 188
           P+RT   P  P+R G+ PQ   G
Sbjct: 731 PQRTGMQPMAPQRTGMQPQMTGG 753


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 36  HQQHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQGPT 146
           H QH   H+  +E L+   PG +     P  + Q PT
Sbjct: 196 HHQHIQAHEMAQESLETRNPGNISSSSAPLASDQSPT 232


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 388 LVFYYKHAFY*RMHRFFLIVYSSVNYKQIWRPWRV 492
           L F   + +Y  +   F I YS      IW PWRV
Sbjct: 662 LFFLDTYLWYMLISTMFSIAYSFYMGSAIWTPWRV 696


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 4   LEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 135
           L+   K +S+  N IR +I   E++    H    +S  FL+E Y
Sbjct: 671 LKKVYKPKSEAINPIRTIISNWENNSYTNHSSYQISNLFLEEDY 714


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 19  KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 132
           ++E DV  S++        +  DYH    LSGE LD +
Sbjct: 146 EVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 266  PPLRSNPF*NVTSKKIWRKIVLCNN 340
            P LRS+P  + T+KK    ++LC N
Sbjct: 1631 PGLRSDPAESATNKKASEFVILCFN 1655


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,884
Number of Sequences: 5004
Number of extensions: 45341
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)