Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0858
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 39 0.003
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 33 0.17
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 31 0.93
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 29 2.2
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393 28 5.0
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 28 5.0
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726... 28 6.6
12_02_0911 + 24236374-24237582 27 8.7
03_02_0316 - 7408003-7409340 27 8.7
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +1
Query: 1 ALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 180
A+E AL LE V + + + S ND L D++ EFL+EQ + + ++ + L++
Sbjct: 178 AMELALALEKLVNEKLHN-LHSVASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRR 236
Query: 181 MMDKHAALGEFIFDKKLL 234
+ H G + FD+KLL
Sbjct: 237 VGKGH---GVWHFDQKLL 251
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +1
Query: 73 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFIFDKKLL 234
S ND L D++ EFL+EQ + + ++ + L+++ H G + FD+KLL
Sbjct: 227 SRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH---GVWHFDQKLL 277
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 10 HALKLESDVTNSIREVIK-TCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 180
H L V S +E I T ES F YH+ YLS + + + K Q+ + G KK
Sbjct: 141 HFTVLVRGVPKSTKESISCTVESFFTKYHVSSYLSHQIIYKVGKLQKIVTGAKKAYKK 198
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 43 SIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM-DKHAALGEFIF 219
S++++ K C ++D + + +S E L+E TLK +M +K A+ G F+
Sbjct: 1356 SVQQLYKICTQYWDDKYNTESVSEEVLNEMKTLMNGKDASDGTLKSLMNEKDASDGTFLL 1415
Query: 220 DKKL 231
++++
Sbjct: 1416 NEEI 1419
>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
Length = 278
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 90 PPGRLFVRGIPRRTVQGPTRPRRQG-LDPQEDDGQTRRPRRVHL 218
PPG VR P++ Q P PRR+ P R P R HL
Sbjct: 118 PPGFAGVRQPPQKQQQLPPPPRRRAQQQPASAAAHHRNPNRHHL 161
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 28 SDVTNSIREVIKTCESSFNDYHLV 99
+D+TN+ E I T SS ND+ LV
Sbjct: 393 TDITNAALEAIGTYSSSLNDFRLV 416
>04_04_1528 +
34172149-34172233,34172335-34172414,34172621-34172689,
34172780-34172837,34173296-34173357,34173441-34173554,
34173862-34173964,34174085-34174134,34174335-34174724,
34174918-34175244,34175360-34175689
Length = 555
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 64 TCESSFNDYHLVDYLSGEFLDEQY-KGQRDLAGKASTL-KKMMDKHAALGEFI 216
TC+SSFND + + ++G E + K Q DL + + KK D+ + EF+
Sbjct: 401 TCDSSFNDKPIRETVAGPLGKELFEKEQEDLLSDLNDIPKKACDRR--INEFV 451
>12_02_0911 + 24236374-24237582
Length = 402
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 16 LKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDL 153
L+L+ S +EV +H+ D+LS +EQY G L
Sbjct: 181 LQLQQQTPASCQEVFVRSHGEEYGFHVDDFLSDACSNEQYSGDSSL 226
>03_02_0316 - 7408003-7409340
Length = 445
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 160 KASTLKKMMDKHAALGEFIFDKKLLGLN 243
KA+ L KM++KH LGE + GLN
Sbjct: 415 KATELLKMLNKHKGLGECVDAVDFRGLN 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,701,569
Number of Sequences: 37544
Number of extensions: 264083
Number of successful extensions: 572
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -