Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0858
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   7e-05
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   7e-05
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   9e-05
SB_18389| Best HMM Match : Ferritin (HMM E-Value=2.8e-26)              38   0.006
SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_39157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2)                  29   2.9  
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        29   3.8  
SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)                      28   5.0  
SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)                   28   5.0  
SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011)            28   5.0  
SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 27/78 (34%), Positives = 42/78 (53%)
 Frame = +1

Query: 1   ALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 180
           A++ AL LE  V  ++ ++ K  E    D  + D+L   +L EQ +  ++LAG  + LK+
Sbjct: 214 AIQAALDLEKHVNQALLDLHKVAEKH-GDSQMQDWLESHYLTEQVEAIKELAGHLTNLKR 272

Query: 181 MMDKHAALGEFIFDKKLL 234
           +      LGEF FDK  L
Sbjct: 273 V---GPGLGEFQFDKLTL 287


>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%)
 Frame = +1

Query: 1   ALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 180
           A+  AL LE ++ +++ ++ +  +++  D  + D+L   FL EQ    + LA   STL++
Sbjct: 62  AMRDALYLEKEINHALLDLHQVADTN-RDPQVQDFLESNFLGEQVDSIKTLANYVSTLQR 120

Query: 181 MMDKHAALGEFIFDKKLLG 237
           +      LGE+ FDK+ LG
Sbjct: 121 L---GGGLGEYQFDKETLG 136



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 24/79 (30%), Positives = 44/79 (55%)
 Frame = +1

Query: 1   ALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 180
           +++ AL LE  V  ++ ++ K  E    D  + D++ G FL EQ +  ++LAG  + LK+
Sbjct: 282 SIQVALDLEKHVNQALLDLHKIAEKH-GDAQMTDFIEGNFLTEQVEAIKELAGHLTNLKR 340

Query: 181 MMDKHAALGEFIFDKKLLG 237
           +      LGE+ +D + +G
Sbjct: 341 V---GPGLGEYQYDHETIG 356


>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 26/77 (33%), Positives = 41/77 (53%)
 Frame = +1

Query: 4   LEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKM 183
           ++ AL LE  V  ++ ++ K  E    D  + D+L   +L EQ +  ++LAG  + LK++
Sbjct: 230 IQAALDLEKHVNQALHDLHKVAEKH-GDSQMQDWLESHYLTEQVEAIKELAGHMTNLKRV 288

Query: 184 MDKHAALGEFIFDKKLL 234
                 LGEF FDK  L
Sbjct: 289 ---GPGLGEFQFDKHTL 302


>SB_18389| Best HMM Match : Ferritin (HMM E-Value=2.8e-26)
          Length = 175

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 24/75 (32%), Positives = 45/75 (60%)
 Frame = +1

Query: 7   EHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM 186
           E AL+ E  VT+++ +VI  C    NDY   +++   ++ EQ + +R+ A +A  L  ++
Sbjct: 97  EIALQNEIAVTHAVNKVIAKCRQE-NDYATEEFMMW-YVKEQREEERN-ARRALELFDLI 153

Query: 187 DKHAALGEFIFDKKL 231
           D+ +A G+F  DK++
Sbjct: 154 DEDSATGKFQLDKEI 168


>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
 Frame = +3

Query: 3   PRARPQAGE*RHQQHPGGHQDLREQLQRLPPGRLFVRGIPRRT---------VQGPTRPR 155
           PR RP +     ++    HQ+ R + +R PP     RG PR++          QG    +
Sbjct: 56  PRPRPNSEGKEGEEADHEHQEERPRGRRPPPWWRRRRGPPRKSDSAEHSGADSQGEGN-K 114

Query: 156 RQGLDPQEDDGQTRRPRRVHLRQ-ETPRIE 242
           ++G   +E + + RRPRR   R+   PR E
Sbjct: 115 QEGSAEEEREQRPRRPRRPRFRKSRQPRSE 144


>SB_39157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = +1

Query: 46  IREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTL--KKMMDKHAALGEFIF 219
           +R V  T E  ++D H  DY S       YKG + L  K       K       L EF F
Sbjct: 6   VRVVSDTVELLWSDGHATDYKSSWLAQHAYKGNKKLRVKEELFLWDKERINSTTLPEFSF 65

Query: 220 D 222
           D
Sbjct: 66  D 66


>SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2)
          Length = 919

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/70 (31%), Positives = 35/70 (50%)
 Frame = +1

Query: 16  LKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKH 195
           L+LE +VT S+R+     +S+F+    V    GE  D     Q     +A     ++ +H
Sbjct: 557 LRLEGEVTISLRK-----QSTFSSLAQVRIFIGE--DPTSSRQPSYRVQAPATTWILKQH 609

Query: 196 AALGEFIFDK 225
            +L EFIFD+
Sbjct: 610 ESLSEFIFDE 619


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 4    LEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLS 111
            LEH L+ E++  N +R+   T  SS N+Y  V+YL+
Sbjct: 1829 LEHRLETEANDKNKLRQENITLASSLNEYK-VNYLT 1863


>SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)
          Length = 488

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 3   PRARPQAGE*RHQQHPGGHQDLREQLQRLPPGRLFV-RGIPRRTVQGPTRPRRQG 164
           PR  P A + + ++ P  ++     L R PP  + V   +PR T   PT  RRQG
Sbjct: 433 PRRSPPAYKPQLKESPKVNRIRDAHLLRPPPPLVRVAEDVPRNTDTSPTLSRRQG 487


>SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)
          Length = 355

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 156 RQGLDPQEDDGQTRRPRRVHLRQETPR 236
           R+   PQ+ D Q  RPR+   RQ  PR
Sbjct: 41  RKTSKPQDQDKQAARPRQARTRQARPR 67


>SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011)
          Length = 318

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 34  VTNSIREVIKTCESSFNDYHLVDYLSGEFLDE 129
           +  ++ EV    E   NDY ++DY+  +F ++
Sbjct: 187 INEALEEVSSDAEKQANDYEIIDYMMHKFKEQ 218


>SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 147 RPRRQGLDPQEDDGQTRRPRRVHLR 221
           RPR+    PQ+ D Q  RPR+  L+
Sbjct: 41  RPRQASRKPQDQDKQAARPRQASLK 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,321,383
Number of Sequences: 59808
Number of extensions: 321626
Number of successful extensions: 772
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)