Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0858
         (600 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    24   3.3  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    24   3.3  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              23   5.7  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   10.0 

>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -2

Query: 83  LKLLSQVLMTSRMLLVTSLSSL 18
           LKLL+ V MTS+M+L+T L  L
Sbjct: 897 LKLLA-VCMTSQMMLITQLMPL 917


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 60  QDLREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQEDDGQTRRPRRVHLRQETP 233
           Q  ++Q Q+   G  +V    R+  Q     ++Q   PQ+   Q +RP++   +Q  P
Sbjct: 436 QQQQQQQQQQQQGERYVPPQLRQQRQQQQPQQQQQQRPQQQRPQQQRPQQQRSQQRKP 493



 Score = 23.8 bits (49), Expect = 4.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 135 QGPTRPRRQGLDPQEDDGQTRRPRRVHLRQETP 233
           Q P + R Q   PQ+   Q R+P +  L + +P
Sbjct: 471 QRPQQQRPQQQRPQQQRSQQRKPAKPELIEVSP 503



 Score = 23.4 bits (48), Expect = 5.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 3   PRARPQAGE*RHQQHPGGHQDLREQLQR 86
           P+ R Q  + +HQQ     Q  R+Q QR
Sbjct: 300 PQLRQQRQQQQHQQQQQQQQQQRQQQQR 327


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +3

Query: 12  RPQAGE*RHQQHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQEDDGQ 191
           R Q    +HQ+     Q  R+Q Q+     L+   + RR      +   Q    Q+  G+
Sbjct: 279 RVQQQNQQHQRQQQQQQQQRQQQQQQEQQELWTTVVRRRQNTQQQQQSNQPQQQQQQTGR 338

Query: 192 TRRPR-RVHLRQE 227
            + P+ R  L+Q+
Sbjct: 339 YQPPQMRQQLQQQ 351


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 13  ALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYK 138
           A++  + V    +E      S  ND+++ D++SG   + + K
Sbjct: 841 AIRTLNQVLEDNKEKYPLAASRINDFYVDDFISGADSENEAK 882


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,007
Number of Sequences: 2352
Number of extensions: 10991
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)