Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0858
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.0  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 153 RRQGLDPQEDDGQTRRPRRVHLRQETPRIE 242
           R+Q +DP   + Q  R RRV + +    +E
Sbjct: 96  RKQTIDPLSSNTQITRKRRVGIVENQYAVE 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 72   EQLQRLPPGRLFVRGIPR 125
            ++L++LP G LF++ + R
Sbjct: 1321 DRLRQLPEGSLFIKEVDR 1338


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 6   RARPQAGE*RHQQHPGGHQDLREQLQRLPPG 98
           +A+PQ  + + QQ P   Q  ++Q Q+   G
Sbjct: 827 QAQPQQQQQQQQQQPQQQQQQQQQQQQQQRG 857


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,445
Number of Sequences: 438
Number of extensions: 3416
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)