Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0858
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ...    36   0.015
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    35   0.036
At3g44990.1 68416.m04847 xyloglucan:xyloglucosyl transferase, pu...    27   9.5  

>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
           subunit cowpea2 precursor GI:2970654 (Vigna
           unguiculata); contains Pfam profile PF00210:
           Ferritin-like domain
          Length = 253

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 25/78 (32%), Positives = 42/78 (53%)
 Frame = +1

Query: 1   ALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 180
           A+E AL LE  +TN     +++     ND  LVD++  EFL EQ +  + ++   + L++
Sbjct: 176 AMELALSLEK-LTNEKLLKLQSVGVKNNDVQLVDFVESEFLGEQVEAIKKISEYVAQLRR 234

Query: 181 MMDKHAALGEFIFDKKLL 234
           +   H   G + FD+ LL
Sbjct: 235 IGKGH---GVWHFDQMLL 249


>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 23/77 (29%), Positives = 40/77 (51%)
 Frame = +1

Query: 4   LEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKM 183
           +E AL LE  V   +   + +  S  ND HL D++  EFL EQ +  + ++   + L+++
Sbjct: 185 MELALSLEKLVNEKLLN-LHSVASKNNDVHLADFIESEFLTEQVEAIKLISEYVAQLRRV 243

Query: 184 MDKHAALGEFIFDKKLL 234
              H   G + F++ LL
Sbjct: 244 GKGH---GTWHFNQMLL 257


>At3g44990.1 68416.m04847 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative
          Length = 293

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = +3

Query: 36  HQQHPGGHQDLREQLQRLPPGR-------LFVRGIPRRTVQGPTRPRRQGLDPQED 182
           +Q+HPG H ++  +     PG+       +FVRG   R V G         DP +D
Sbjct: 105 NQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQD 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,393,669
Number of Sequences: 28952
Number of extensions: 224360
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)