Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0857
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    96   4e-21
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    34   0.022
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...    33   0.051
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    31   0.12 
SPAC227.04 |||autophagy C terminal domain family protein|Schizos...    26   5.9  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    25   7.8  
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    25   7.8  

>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 96.3 bits (229), Expect = 4e-21
 Identities = 44/87 (50%), Positives = 58/87 (66%)
 Frame = +3

Query: 18  VDIVSYESELQMPEIMRLIQKDLSEPYSIYTYRYFIHNWPKLCFLARHEGKCIGAIVCKL 197
           V IV Y S   + +I +LIQKDLSEPYS Y YRYF+H WP+  F+A    + IGA++CK 
Sbjct: 2   VTIVPY-SHQYLKDICQLIQKDLSEPYSKYVYRYFVHQWPEFSFVALDNDRFIGAVICKQ 60

Query: 198 DIHRNAVKRGYIAMLAVDENIGSERLA 278
           D+HR    RGYIAMLA+ +    + +A
Sbjct: 61  DVHRGTTLRGYIAMLAIVKEYRGQGIA 87



 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 33/63 (52%), Positives = 44/63 (69%)
 Frame = +2

Query: 254 EYRKRKIGSRLVRKAIQAMINDTADEVVLETEITNKPALKLYENLGFVRDKRLFRYYLNG 433
           EYR + I ++L + ++  M N  A E+VLETE+ N+ A+  YE LGF R KRL+RYYLNG
Sbjct: 80  EYRGQGIATKLTQASLDVMKNRGAQEIVLETEVDNEAAMSFYERLGFCRYKRLYRYYLNG 139

Query: 434 VDA 442
            DA
Sbjct: 140 TDA 142


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 257 YRKRKIGSRLVRKAIQAMINDTADEVVLETEITNKPALKLYENLGFVRDKRLFRYY 424
           YR   IGS L+    +  IN+  D + L  + TN+  +K Y   GF   K++  +Y
Sbjct: 453 YRCLGIGSLLIDHVKKTAINNNIDRISLHVQTTNESVIKWYTAHGFKIVKQINDFY 508


>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score = 32.7 bits (71), Expect = 0.051
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +3

Query: 81  DLSEPYSIYTYRYFIHNWPKLCFLARH-EGKCIGAIVCKLDIH-RNAVKRGYIAMLAV 248
           +L E Y +  Y Y   +WP L ++A   +G+ +G ++ K++   ++ +  G+I  ++V
Sbjct: 21  NLPENYQLKYYLYHAISWPMLSYVATDPKGRVVGYVLAKMEEEPKDGIPHGHITSVSV 78


>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +2

Query: 254 EYRKRKIGSRLVRKAIQAMINDTADEVVLETEITNKPALKLYENLGFVRDKRLFRYYLNG 433
           E R  K+G  LV++ IQ         +VL+T  T  PA++LY++ GF   K    YY N 
Sbjct: 94  ESRGLKLGVLLVKEIIQYSEKLGYSSMVLDTLDTLLPAVRLYKSFGF---KTTEPYYHNP 150

Query: 434 V 436
           +
Sbjct: 151 I 151


>SPAC227.04 |||autophagy C terminal domain family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 219 LLHFDECLTYIQWH 178
           L+ FDEC+  ++WH
Sbjct: 23  LIEFDECILKLEWH 36


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 636 IKMRNKHYIW-LDPHRWQYVATIDKNINSSILCIYSILH 523
           ++ R+   IW  D +RW  +  + +N   +    Y ++H
Sbjct: 224 LQFRDPKVIWDFDANRWVMIVAMSQNYGIAFYSSYDLIH 262


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 84  LSEPYSIYTYRYFIHNWPKLC 146
           L+E ++I  Y  +++ WP LC
Sbjct: 23  LTETFNISFYLSYLNKWPSLC 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,797
Number of Sequences: 5004
Number of extensions: 56659
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)