Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0857
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0016 - 18410889-18411104,18411326-18411381,18412883-184130...    96   2e-20
03_05_0805 - 27839576-27839667,27839763-27839823,27840082-278401...    40   0.002
01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739     38   0.010
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227     37   0.017
03_01_0541 + 4064491-4064715,4065018-4065070,4065190-4065226,406...    33   0.21 
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426...    29   2.6  

>11_05_0016 -
           18410889-18411104,18411326-18411381,18412883-18413009,
           18413113-18413307
          Length = 197

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 2/82 (2%)
 Frame = +3

Query: 9   GDDVDIVSYESELQMPEIMRLIQKDLSEPYSIYTYRYFIHNWPKLCFLA--RHEGKCIGA 182
           G ++  VSY  E  +P +M L+ ++LSEPYSI+TYRYF++ WP+L FLA    +GKC+G 
Sbjct: 18  GGEIAYVSYGGEHHLPLVMSLVDEELSEPYSIFTYRYFVYLWPQLTFLAFDPKDGKCVGT 77

Query: 183 IVCKLDIHRNAVKRGYIAMLAV 248
           +VCK+  HR A  RGYIAML V
Sbjct: 78  VVCKMGEHRGAF-RGYIAMLVV 98



 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 36/62 (58%), Positives = 45/62 (72%)
 Frame = +2

Query: 257 YRKRKIGSRLVRKAIQAMINDTADEVVLETEITNKPALKLYENLGFVRDKRLFRYYLNGV 436
           YR R I + LV ++I+ M+    +EV LE E+TNK AL LY  LGF+R KRL+RYYLNGV
Sbjct: 102 YRGRGIATELVTRSIRVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLYRYYLNGV 161

Query: 437 DA 442
           DA
Sbjct: 162 DA 163


>03_05_0805 -
           27839576-27839667,27839763-27839823,27840082-27840151,
           27841167-27841299,27841928-27842018,27842097-27842174
          Length = 174

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
 Frame = +2

Query: 254 EYRKRKIGSRLVRKAIQAMINDTADE---VVLETEITNKPALKLYENLGFVRDKRLFRYY 424
           E+R++K+  +L+   +   I+D  D+   V L    +N PA+++YE LG+V  +R+ RYY
Sbjct: 80  EFRRQKLAKKLMN--LLEEISDKMDKAYFVDLFVRASNMPAIRMYEKLGYVVYRRVLRYY 137


>01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739
          Length = 179

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 257 YRKRKIGSRLVRKAIQAMINDTADEVVLETEITNKPALKLYENLGFVRDKRLFRYYLN 430
           YR   IGS+L+   I         E+ L  +  N  A+  Y+  GF   K + +YY N
Sbjct: 102 YRSLGIGSKLLNHVIDLCEKQNIPEIYLHVQTNNDDAIAFYKKFGFEITKTIEKYYKN 159


>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
          Length = 227

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 84  LSEPYSIYTYRYFIHNWPKLCFLAR-HEGKCIGAIVCKLDIHRNAVKRGYIAMLAV 248
           L E Y +  Y Y + +WP+L F+A  + G+ +G ++ K++   +    G+I  LAV
Sbjct: 23  LPENYQMKYYLYHMLSWPQLLFVAEDYGGRIVGYVLAKMEEDPSEPCHGHITSLAV 78


>03_01_0541 +
           4064491-4064715,4065018-4065070,4065190-4065226,
           4065409-4065474,4065809-4065907,4066000-4066153,
           4066267-4066343,4066438-4066500
          Length = 257

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 218 KKGLHCNVGC**EYRKRK-IGSRLVRKAIQAMINDTADEVVLETEITNKPALKLYENLGF 394
           K G   NV C  +Y +R+ I S ++  AI A   + A+EV +     N PA +LY+ +GF
Sbjct: 178 KFGYLTNV-CVAKYARRQGIASNMLLLAIDAARLNGAEEVYIHVHKDNLPARRLYDQIGF 236


>08_02_1554 +
           27841801-27842007,27842282-27842455,27842554-27842653,
           27843273-27843725,27843936-27844469,27844500-27844580,
           27844690-27844781,27844890-27844963,27845071-27845293,
           27845429-27845522,27845607-27845761,27845899-27846129,
           27846803-27847003,27847257-27847382,27847497-27847558,
           27847775-27847892,27848040-27848324,27848475-27848513
          Length = 1082

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 621 KHYIWLDPHRWQYVATIDKNI-NSSILCIYSILH 523
           +HYI  D H W YV T   N+ N   +   S LH
Sbjct: 302 RHYISADIHSWVYVKTFSANVKNDQPILTISPLH 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,068,251
Number of Sequences: 37544
Number of extensions: 293514
Number of successful extensions: 542
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)