Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0857
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)       132   3e-31
SB_58037| Best HMM Match : DUF750 (HMM E-Value=1.8)                    29   4.7  

>SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)
          Length = 259

 Score =  132 bits (318), Expect = 3e-31
 Identities = 56/86 (65%), Positives = 71/86 (82%)
 Frame = +3

Query: 18  VDIVSYESELQMPEIMRLIQKDLSEPYSIYTYRYFIHNWPKLCFLARHEGKCIGAIVCKL 197
           ++ +SYESE QM  IM LI KDLSEPYSIYTYRYFIHNWP LCFLA ++ +C+GAIVCKL
Sbjct: 110 IEYISYESEHQMKAIMALITKDLSEPYSIYTYRYFIHNWPNLCFLAMYKDQCVGAIVCKL 169

Query: 198 DIHRNAVKRGYIAMLAVDENIGSERL 275
           D+H++ V RGYIAMLAV+++    ++
Sbjct: 170 DVHKSMVHRGYIAMLAVEKDFRRHKI 195



 Score =  108 bits (259), Expect = 5e-24
 Identities = 50/63 (79%), Positives = 57/63 (90%)
 Frame = +2

Query: 254 EYRKRKIGSRLVRKAIQAMINDTADEVVLETEITNKPALKLYENLGFVRDKRLFRYYLNG 433
           ++R+ KIG+ LV+KAI+AMI D  DEVVLETEITNK AL+LYENLGFVRDKRLFRYYLNG
Sbjct: 189 DFRRHKIGTALVKKAIRAMIEDNCDEVVLETEITNKAALRLYENLGFVRDKRLFRYYLNG 248

Query: 434 VDA 442
           VDA
Sbjct: 249 VDA 251


>SB_58037| Best HMM Match : DUF750 (HMM E-Value=1.8)
          Length = 281

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 111 YRYFIHNWPKLCFLARHEGKCIGAIVCKLDIHRNAV 218
           +R   H+W K+ +LAR+EG   G++  K+D+  + +
Sbjct: 119 FRKVEHDW-KMAYLARNEGCQTGSVSWKVDVSESGL 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,478,589
Number of Sequences: 59808
Number of extensions: 367332
Number of successful extensions: 755
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)