Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0857
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016450-12|AAB65989.1|  278|Caenorhabditis elegans Hypothetical...   105   3e-23
AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical...    38   0.007
U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    30   1.4  
AC024878-1|AAK85513.1|  173|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z75526-3|CAA99769.1|  578|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF016450-12|AAB65989.1|  278|Caenorhabditis elegans Hypothetical
           protein B0238.10 protein.
          Length = 278

 Score =  105 bits (252), Expect = 3e-23
 Identities = 48/83 (57%), Positives = 64/83 (77%), Gaps = 2/83 (2%)
 Frame = +3

Query: 15  DVDIVSYESELQMPEIMRLIQKDLSEPYSIYTYRYFIHNWPKLCFLA--RHEGKCIGAIV 188
           ++ IV+Y+ E Q+ +IMRLI KDLSEPYSIYTYRYF+HNWP+ CFLA  +     IGA++
Sbjct: 94  NIRIVAYKDESQINDIMRLITKDLSEPYSIYTYRYFLHNWPEYCFLAYDQTNNTYIGAVL 153

Query: 189 CKLDIHRNAVKRGYIAMLAVDEN 257
           CKL++      +GY+AMLAVDE+
Sbjct: 154 CKLELDMYGRCKGYLAMLAVDES 176



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 37/61 (60%), Positives = 48/61 (78%)
 Frame = +2

Query: 260 RKRKIGSRLVRKAIQAMINDTADEVVLETEITNKPALKLYENLGFVRDKRLFRYYLNGVD 439
           R+  IG+RLVR+A+ AM +   DE+VLETE++NK A +LY NLGF+R KRL +YYLNG D
Sbjct: 178 RRLGIGTRLVRRALDAMQSKGCDEIVLETEVSNKNAQRLYSNLGFIRQKRLLKYYLNGGD 237

Query: 440 A 442
           A
Sbjct: 238 A 238


>AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical
           protein K07H8.3 protein.
          Length = 182

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 84  LSEPYSIYTYRYFIHNWPKLCFLAR-HEGKCIGAIVCKLDIHRNAVKRGYIAMLAV 248
           L E Y +  Y Y   +WP+L ++A  H+G  +G ++ K++        G+I  LAV
Sbjct: 22  LPENYQMKYYFYHALSWPQLSYIAEDHKGNVVGYVLAKMEEDPGEEPHGHITSLAV 77


>U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical
           protein F40F4.7 protein.
          Length = 245

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 257 YRKRKIGSRLVRKAIQAMIN-DTADEVVLETEITNKPALKLYENLGFVRDKRLFRYY 424
           YR+  IG+ L+  A++     +    + L  ++ NK A++ YE  GF  D  +  YY
Sbjct: 173 YRQIGIGTILIDYALKLCNKMEEIKTMYLHVQVNNKNAVQFYEKHGFTNDGIIEDYY 229


>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +3

Query: 486 MRFLNFVLNNLQYAVLSIYIKYYCLYSYLLWQHIAIYVDLAKCSVYFSF 632
           ++F  +V  ++++A   + +K      Y LW+H+ +   +    +YF+F
Sbjct: 151 LKFQTYVTKHIKFAYCLLIVKDILALIYALWKHVNLKGGIDVYFIYFAF 199


>AC024878-1|AAK85513.1|  173|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.3 protein.
          Length = 173

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 332 VVLETEITNKPALKLYENLGFVRDKRLFRYYLNGVD 439
           V L   ++NK A++LY+ LG+V  +++  YY    D
Sbjct: 106 VDLFVRVSNKIAIELYKKLGYVVYRQIIGYYTGDRD 141


>Z75526-3|CAA99769.1|  578|Caenorhabditis elegans Hypothetical
           protein C06H2.3 protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 254 EYRKRKIGSRLVRKA-IQAMINDTADEVVLETEITNKPALKLYENLGF 394
           E+R+R+I S L+R+A I A        V    +++   AL+ Y NLGF
Sbjct: 78  EFRRRRIASDLIREALIYAQSESPNSPVYAYAQVS---ALQAYVNLGF 122


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
 Frame = +2

Query: 260 RKRKIGSRLVRKAIQAMINDTADEVVL---ETEITNKPALKLYENLGFVRDKRLFRYYLN 430
           R    G  L  K I AM+N++  E       T I N    KL +N   +      RY LN
Sbjct: 23  RNLTCGHALCHKCITAMVNNSTVECPFCRTVTNIVNNDITKLLKNFALIEVIEDARYSLN 82

Query: 431 GVD 439
             D
Sbjct: 83  KKD 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,102,597
Number of Sequences: 27780
Number of extensions: 305012
Number of successful extensions: 798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)