Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0857
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    26   0.39 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.90 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    23   3.6  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   6.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.4  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 627 RNKHYIWLDPHRWQYVATIDKNIN 556
           +N  YIW+  +++Q +A  D N N
Sbjct: 368 QNNEYIWIVSNKYQKIANGDLNFN 391


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -1

Query: 279 EPIFRFLYSHQ---QPTLQCSPFLLHFDECLTYIQWHQYTSL 163
           +P  R + SHQ     T+Q  P L+ FD+  + ++ H + +L
Sbjct: 56  DPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTL 97


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 237 LQCSPFLLHFDECLTYIQWHQYTSLHVL 154
           ++CS  + HF+       W + TSLH L
Sbjct: 71  IRCSD-VHHFESSFNAQSWQRLTSLHEL 97


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 501 FVLNNLQYAVLS 536
           FVLN +QYA+L+
Sbjct: 8   FVLNRIQYAILN 19


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 690 GKKKL*INYIQWYHMDFGIKMRNKHYIW 607
           GK+K+ IN +   H+D G      H I+
Sbjct: 2   GKEKIHINIVVIGHVDSGKSTTTGHLIY 29


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 690 GKKKL*INYIQWYHMDFGIKMRNKHYIW 607
           GK+K+ IN +   H+D G      H I+
Sbjct: 2   GKEKIHINIVVIGHVDSGKSTTTGHLIY 29


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 585 YVATIDKNINSSILCIYSILHIASYLTQN 499
           YV  +D   + + + I +  HI  ++T+N
Sbjct: 467 YVIILDDEHDDAFIGIVNQFHILQFITKN 495


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,304
Number of Sequences: 438
Number of extensions: 3891
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)