Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0856
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015BD0C7 Cluster: UPI00015BD0C7 related cluster; n...    34   3.8  
UniRef50_A3LS44 Cluster: Predicted protein; n=5; Saccharomycetal...    33   5.0  
UniRef50_Q2SJZ5 Cluster: Nucleotidyltransferase/DNA polymerase i...    33   6.6  

>UniRef50_UPI00015BD0C7 Cluster: UPI00015BD0C7 related cluster; n=1;
           unknown|Rep: UPI00015BD0C7 UniRef100 entry - unknown
          Length = 214

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +1

Query: 547 FYLYYIKTDFRLGFFV*VVINVVDSLSGRYAQ 642
           F+L+ +K D +L FF+ +++++ D+L G  A+
Sbjct: 23  FFLFLVKADIKLAFFLFILVSITDALDGLIAR 54


>UniRef50_A3LS44 Cluster: Predicted protein; n=5;
           Saccharomycetales|Rep: Predicted protein - Pichia
           stipitis (Yeast)
          Length = 887

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 20/47 (42%), Positives = 24/47 (51%)
 Frame = +3

Query: 3   ARATTKTVNALTIREALSDT*HSGNLHNVQCPRFDVLD*TYSTDKDK 143
           A A   TVN +TI E   +   SGNL N    +FDV+D T    K K
Sbjct: 599 ANAELNTVNQITIAEITEE--ESGNLTNKLSKKFDVVDSTKQKQKSK 643


>UniRef50_Q2SJZ5 Cluster: Nucleotidyltransferase/DNA polymerase
           involved in DNA repair; n=1; Hahella chejuensis KCTC
           2396|Rep: Nucleotidyltransferase/DNA polymerase involved
           in DNA repair - Hahella chejuensis (strain KCTC 2396)
          Length = 432

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 23/82 (28%), Positives = 38/82 (46%)
 Frame = -1

Query: 295 SWQFTILSLTKRYPRSEGLTASLHEFRPHNVDKA*SIFKRVSPTLSLDMYNLSLSVEYVQ 116
           +++ T+LS T  +P++  L A     R  N +     F R    L LD  NL   +EY  
Sbjct: 91  TFKITVLSATAPHPKAAHLLARSGIERDVNAES----FWRTLKRLKLDRLNLESRIEYKL 146

Query: 115 SKTSNRGHWTL*RLPLCYVSER 50
            K   +  + + +LP C ++ R
Sbjct: 147 RKVGLKSIYDIAKLPSCDLAYR 168


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 685,211,885
Number of Sequences: 1657284
Number of extensions: 13517604
Number of successful extensions: 22956
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22951
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)