Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0856
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 28 1.1
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 28 1.5
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 27 1.9
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 27 2.6
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 26 4.5
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 4.5
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo... 26 5.9
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo... 26 5.9
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 5.9
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 7.9
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 199 CQHCEDETHGGRPSDPPTSDNALSNLGS*TASSQP 303
C + +T+GG PSD P+S ++ S GS S+ P
Sbjct: 363 CSYISSKTNGGGPSDSPSS-SSTSVRGSVNDSNSP 396
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 27.9 bits (59), Expect = 1.5
Identities = 26/107 (24%), Positives = 42/107 (39%)
Frame = -1
Query: 403 CVLLIVLCSITPRFHEDNIDVRTCSLPFTSYRTPAVSWQFTILSLTKRYPRSEGLTASLH 224
C I +T R HE N + + SY T L + YP + + +++
Sbjct: 208 CKFSIETFRLTDRLHESNRHINDQLIRLLSYET----------KLKESYPSLKRIVSNVF 257
Query: 223 EFRPHNVDKA*SIFKRVSPTLSLDMYNLSLSVEYVQSKTSNRGHWTL 83
+ ++K I KRV P +LD Y + Q+ + R W L
Sbjct: 258 D----RIEK--EILKRVQPPTNLDAYRFD-PQQICQTNATKRQGWLL 297
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3
Query: 536 LRLTQVTLHYLSLNCL 489
L TQ+T+ YLSLNCL
Sbjct: 326 LTFTQLTIFYLSLNCL 341
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 325 PFTSYRTPAVSWQFTILSLTKRY--PRSEGLTASLHEFRPHNVDKA 194
PF + + S+ FT+ LT Y P TAS E RP + +A
Sbjct: 233 PFKNSKNEKFSYAFTLYPLTTEYMQPAPPNCTASPFEHRPIPLKRA 278
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 176 SFKYTLRFVNIVRTKLMEGGRQTL 247
+F YTL +N++ + GG++TL
Sbjct: 532 AFGYTLEQINMIMAPMANGGKETL 555
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 316 SYRTPAVSWQ-FTILSLTKRYPRSEG 242
SY TP +S + FT+L L + P SEG
Sbjct: 420 SYLTPTLSQKLFTVLDLRSQLPYSEG 445
>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
Srk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 424 IDYGQ*GCVLLIVLCSITPRFHEDNIDVRT 335
+D GCVL +LC P F++++I + T
Sbjct: 344 VDMWALGCVLYTILCGFPP-FYDESISLLT 372
>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 246
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 334 CSLPFTSYRTPAVSWQFTILSLTKRYPRSEGLTAS 230
C L T Y P ++ +L+LT+ +P S+ + S
Sbjct: 110 CQLTETGYMCPVDEFKNNLLALTRPFPHSKIIIVS 144
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 129 TDKDKLYISRDKVGETRLNILYALSTL*GRNSWREA 236
TD+D I K G T N++Y T+ +SW +
Sbjct: 659 TDEDSAIIGPWKSGTTLRNLIYPYDTIELEDSWNSS 694
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 394 LIVLCSITPRFHEDNIDVRTCSLPFTSY 311
L +LCSI E+N+D CSLP +S+
Sbjct: 730 LKMLCSI----RENNLDGLVCSLPLSSF 753
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,761
Number of Sequences: 5004
Number of extensions: 59599
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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