Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0856
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58203| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_41008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      29   4.7  
SB_25258| Best HMM Match : PID (HMM E-Value=1e-06)                     28   6.2  
SB_54238| Best HMM Match : Apolipoprotein (HMM E-Value=1.7)            28   8.3  

>SB_58203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 156 WICTIY--LYQLNMFNLKHQIVDIGRCEDCHYVMCPRGLP*SLMHLRFLLWLVP 1
           W+C +   L+++  + L+HQ+ +   C   HY+        +L +L+F+LW+ P
Sbjct: 187 WLCIVISVLFEVLEYTLEHQLPNFCECWWDHYLTAEL----TLFYLKFILWIPP 236


>SB_41008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 40  LGKPSRTHNIVAIFTTSNVH 99
           LG P+R HNIVA++ T  +H
Sbjct: 97  LGVPARGHNIVALYPTGALH 116


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 105 QIVDIGRCEDCHYVMCPRG 49
           Q++ +G C+ CH V CP G
Sbjct: 728 QLIRLGSCDVCHLVSCPVG 746


>SB_25258| Best HMM Match : PID (HMM E-Value=1e-06)
          Length = 214

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 150 CTIYLYQLNMFNLKHQIVDIGRCEDCHYVMC 58
           CT+  Y+  +F   H +    R  +CH +MC
Sbjct: 87  CTLNRYETCIFAFNHHVSKSPRKVECHAIMC 117


>SB_54238| Best HMM Match : Apolipoprotein (HMM E-Value=1.7)
          Length = 286

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 376 ITPRFHEDNIDVRTCSLPFTSYRTPAVSWQFTILSLTKRYPRSEGLTASLH 224
           +T   H  + +V T SL  +SY      +  +    T  YP S G+T SLH
Sbjct: 221 VTTSLHPSSYEVTT-SLHPSSYEVTTSLYPSSYEVTTSLYPSSYGVTISLH 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,654,207
Number of Sequences: 59808
Number of extensions: 436234
Number of successful extensions: 743
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)