Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0855
         (520 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   2.8  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   6.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.7  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 435 GNGNHSPSGGP 467
           G+GN+ P GGP
Sbjct: 530 GSGNNQPPGGP 540



 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 63  PGGDPAAGPMDTNTFS 16
           P G+P  GP+D +  S
Sbjct: 233 PSGEPGNGPLDLSVSS 248


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 126 RVGSELQFNHT*XSYVLPVIIPGG 55
           R+  E+QF  +   Y++ + IP G
Sbjct: 56  RLACEIQFVRSMGYYLIQIYIPSG 79


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 471 HTAHLMVSGYRCPWTSAMPGAEPS 400
           +T H+   G+  P+T  M G E S
Sbjct: 486 YTIHMGYHGFHNPFTCNMCGVECS 509


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 438 NGNHSPSGGPYARLP 482
           +G   P G PY R P
Sbjct: 70  SGGQPPQGMPYPRFP 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,026
Number of Sequences: 336
Number of extensions: 2329
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)