Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0855
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138     30   1.3  
03_05_1051 + 29978655-29979875                                         29   2.2  
01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056     29   2.2  
01_05_0579 + 23393632-23393734,23393765-23394513,23395958-233963...    27   6.8  
08_02_0695 + 20122838-20122949,20123238-20123335,20123520-201236...    27   9.0  
03_06_0502 - 34384285-34384503,34384595-34384755,34384854-343849...    27   9.0  

>08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138
          Length = 275

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 305 PQPPSPPERLWTSELATILR 364
           P PP PP+  W S  AT+LR
Sbjct: 10  PPPPPPPQARWASVAATLLR 29


>03_05_1051 + 29978655-29979875
          Length = 406

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 286 NSRFKTTP*IFLNDKCSRPPARCGPRTST 200
           N RFK     FL D+  RP ARCGP + T
Sbjct: 181 NGRFKDAR--FLLDQMERPGARCGPDSYT 207


>01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056
          Length = 530

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 19  KRVCIHRSRRGVAAGDDDR*NIRXSSVVKLQL 114
           +++CI +SR G AA DDD  N + S V  L +
Sbjct: 466 EKICIFQSRHG-AAPDDDELNAKLSMVASLNI 496


>01_05_0579 +
           23393632-23393734,23393765-23394513,23395958-23396315,
           23396830-23396852
          Length = 410

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 22  RVCIHRSRRGVAAGDDDR*NIRXSSVVKLQL 114
           ++CI +SR G A  DDD  N + S V  L +
Sbjct: 343 KICIFQSRHGTAP-DDDELNAKLSMVASLNI 372


>08_02_0695 +
           20122838-20122949,20123238-20123335,20123520-20123696,
           20123790-20123890,20124049-20124124,20124213-20124272,
           20124362-20124546,20124638-20124734,20124817-20124903,
           20124989-20125047,20125157-20125248,20125436-20125513,
           20125617-20125777,20125880-20126098
          Length = 533

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 375 HLKVAVGSGLVLPLALLKSMGNGN 446
           H  V +G+ +++P AL+  MG GN
Sbjct: 47  HYIVMLGTSVIIPSALVPQMGGGN 70


>03_06_0502 -
           34384285-34384503,34384595-34384755,34384854-34384931,
           34385444-34385595,34385645-34385703,34385808-34385894,
           34385990-34386086,34386232-34386416,34386494-34386553,
           34386640-34386715,34386824-34386924,34387039-34387215,
           34387302-34387399,34387505-34387604
          Length = 549

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 375 HLKVAVGSGLVLPLALLKSMGNGN 446
           H  V +G+ +++P AL+  MG GN
Sbjct: 43  HYLVMLGTTVIIPTALVPQMGGGN 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,327,760
Number of Sequences: 37544
Number of extensions: 332127
Number of successful extensions: 949
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)