Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0855
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48543| Best HMM Match : Exo_endo_phos (HMM E-Value=7.8e-06)         28   4.0  
SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_20106| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_15270| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_9241| Best HMM Match : RRM_1 (HMM E-Value=1.3)                      28   4.0  
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  

>SB_48543| Best HMM Match : Exo_endo_phos (HMM E-Value=7.8e-06)
          Length = 768

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 220 TAPGDANIYRLRIFKALF*SESLN*GIVSAAALTARALMDFRTCNYTET 366
           T P D +++   I+  +F   S+N G       ++R  MD  T +YT+T
Sbjct: 63  THPSDLSLHDPPIYVTIFMDISINPGPEIHLDYSSRPAMDLHTASYTKT 111


>SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1336

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = +3

Query: 216 PHRAGGREHLSFKNIQGVVLKREFKLGNRFRSRPHRQSAYGLQNLQLY*DLRTHLKVAVG 395
           P ++  R  L  ++  GVVL R   + N   S PH +  + LQ  Q     RT L V   
Sbjct: 709 PGQSTSRTTLVVRHTSGVVLSRAVYVQNNTCSTPHIR-CFSLQGRQS--TSRTTLVVRHT 765

Query: 396 SGLVLPLAL 422
           SG+VL  A+
Sbjct: 766 SGVVLSRAV 774


>SB_20106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 167 IVMIIHKVRCSLFSAWGQSCSLTTLEXLMFYLSSSPAATPR 45
           IV + HK  CSL   W  + SL TLE   F L  +P  T R
Sbjct: 110 IVKLDHKGCCSLDIEWEHNHSLETLEASNF-LDLTPECTER 149


>SB_15270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 167 IVMIIHKVRCSLFSAWGQSCSLTTLEXLMFYLSSSPAATPR 45
           IV + HK  CSL   W  + SL TLE   F L  +P  T R
Sbjct: 2   IVKLDHKGCCSLDIEWEHNHSLETLEASNF-LDLTPECTER 41


>SB_9241| Best HMM Match : RRM_1 (HMM E-Value=1.3)
          Length = 204

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 167 IVMIIHKVRCSLFSAWGQSCSLTTLEXLMFYLSSSPAATPR 45
           IV + HK  CSL   W  + SL TLE   F L  +P  T R
Sbjct: 101 IVKLDHKGCCSLDIEWEHNHSLETLEASNF-LDLTPECTER 140


>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1113

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 167 IVMIIHKVRCSLFSAWGQSCSLTTLEXLMFYLSSSPAATPR 45
           IV + HK  CSL   W  + SL TLE   F L  +P  T R
Sbjct: 346 IVKLDHKGCCSLDIEWEHNHSLETLEASNF-LDLTPECTER 385


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,470,268
Number of Sequences: 59808
Number of extensions: 322270
Number of successful extensions: 779
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)