Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0855
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 487 LVGRRAYGPPDGEWLPL 437
           L+G R   PP  +W PL
Sbjct: 408 LIGSRRTSPPPEDWKPL 424


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 463 PPDGEWLPLPMDFSNARG 410
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 126 RVGSELQFNHT*XSYVLPVIIPGG 55
           R+  E+QF  +   Y++ + IP G
Sbjct: 209 RLACEIQFVRSMGYYLIQIYIPSG 232


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 126 RVGSELQFNHT*XSYVLPVIIPGG 55
           R+  E+QF  +   Y++ + IP G
Sbjct: 209 RLACEIQFVRSMGYYLIQIYIPSG 232


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 126 RVGSELQFNHT*XSYVLPVIIPGG 55
           R+  E+QF  +   Y++ + IP G
Sbjct: 148 RLACEIQFVRSMGYYLIQIYIPSG 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,290
Number of Sequences: 438
Number of extensions: 2817
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)