Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0854
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 56 5e-09
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 44 2e-05
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 39 8e-04
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 38 0.001
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 38 0.002
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 35 0.010
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 29 0.48
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.84
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 28 1.1
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 1.9
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 27 1.9
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 7.9
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 7.9
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 7.9
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 7.9
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 56.0 bits (129), Expect = 5e-09
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = +1
Query: 70 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDS 213
+ DS + K+ + + DKLVV+DF ATWCGPCK I PK ++ + SD+
Sbjct: 5 VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDA 50
Score = 34.7 bits (76), Expect = 0.013
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 255 ASEYNINSMPTFVFVKNGKKLDEFSGAN 338
A+E +++MP+F KNG+K++E GAN
Sbjct: 64 AAEAGVHAMPSFFLYKNGEKIEEIVGAN 91
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +1
Query: 70 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAE 201
++ D TR++ DK+ V+DF A WCGPCK + P L++++ +
Sbjct: 22 VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKLSEQ 63
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 38.7 bits (86), Expect = 8e-04
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 64 IHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSD 210
+ ++ ++L+ + A K +I+F ATWCG CK + P +E+ A D
Sbjct: 23 VELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGALFED 70
Score = 30.3 bits (65), Expect = 0.28
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 118 KLVVIDFMATWCGPCKMIGPKLDEI 192
K V+++F A WCG CK + P + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 118 KLVVIDFMATWCGPCKMIGPKLDEIAAEMSD 210
K V+++F A WCG CK + P +++A E SD
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSD 404
Score = 36.3 bits (80), Expect = 0.004
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 115 DKLVVIDFMATWCGPCKMIGPKLDEIAAEM 204
DK++++ F A WCG CK + P+ + A E+
Sbjct: 39 DKVLMVKFYAPWCGHCKALAPEYESAADEL 68
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 258 SEYNINSMPTFVFVKNGKKLDEFSG 332
SEY+I PT KNGK++ ++SG
Sbjct: 88 SEYSIRGYPTLNVFKNGKQISQYSG 112
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 255 ASEYNINSMPTFVFVKNGKKLDEFSGAN 338
AS + +MPTFVF +NGK++D +GAN
Sbjct: 67 ASGLGVKAMPTFVFFENGKQIDMLTGAN 94
Score = 34.3 bits (75), Expect = 0.017
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 124 VVIDFMATWCGPCKMIGPKLDEIAAE 201
+ +D A WCGPCK I P ++A++
Sbjct: 22 LAVDCYADWCGPCKAISPLFSQLASK 47
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 35.1 bits (77), Expect = 0.010
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +1
Query: 58 MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSI 216
MS+ I + + L +++++++F A W PCK + D+ A + +++
Sbjct: 1 MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAV 53
Score = 29.1 bits (62), Expect = 0.64
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 255 ASEYNINSMPTFVFVKNGKKLDEFSGAN 338
A +++N++P FV + K L SGAN
Sbjct: 66 AESFDVNAVPLFVLIHGAKVLARISGAN 93
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 76 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEM 204
+S + + + G LVV F A WCG CK + P ++A+ +
Sbjct: 37 NSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKLASNL 77
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 0.84
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 495 KFITDVKNIFYSFIKNVYMFFFFNSILVSI 406
KFI D +N F+ I Y F F ++L+ +
Sbjct: 436 KFILDSQNFFFESINTEYSFIIFTNLLMHL 465
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 515 TQKLISSNSLQTLKTFFIHLLKTYTCFFFLIP 420
T SS +L +F+ L++ + CFFF+ P
Sbjct: 45 TSYWFSSGPFISLSFWFLSLVRGFVCFFFMFP 76
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 516 NTKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGC 397
+++ N ++TD +NIF +F+ N + F + L I C
Sbjct: 72 SSESNSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 560 NNSINKTRY*LIIYNPK-LYFYFGFFYQV 643
NN++ T+Y L + PK LY F +FY +
Sbjct: 91 NNAVTNTKYDLFTFLPKCLYEQFRYFYNM 119
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 76 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSI 216
+ D + RL EAG + +A CGPC + + D+IA+ ++I
Sbjct: 431 ERDGITERLEEAGATV-----LANACGPCIGMWKRTDDIASGEPNAI 472
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = -3
Query: 602 CKLLTNI*FYLLNCLITTEPIFFAFQRLQTQKLISSNSLQTLKTFFIHLLKTY 444
C ++ I Y L+ T+EPIF+ + QK++ + + + + + +K +
Sbjct: 907 CFGMSAIGAYFLDVARTSEPIFYKCLEILAQKILMNYDYERDEVYLMIFIKIF 959
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/55 (21%), Positives = 24/55 (43%)
Frame = -2
Query: 540 IFCIPEAANTKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGCVQL*SLF 376
I+ + T + + + +++ F S ++N+ FF S G C+ LF
Sbjct: 27 IYFLTSKKITNLGKIRLVKSIRDSFLSQLENILCFFLVYRTTYSFGVCLMKRFLF 81
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 509 KLISSNSLQTLKTFFIHLLKTY 444
KL+SSN+LQ + F+ ++K +
Sbjct: 412 KLVSSNTLQAMSHFYATMIKLF 433
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,475
Number of Sequences: 5004
Number of extensions: 51484
Number of successful extensions: 168
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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