Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0854
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 52 3e-07
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 50 2e-06
SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0) 48 1e-05
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 38 0.006
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06) 38 0.006
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 37 0.013
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 36 0.024
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 36 0.041
SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.054
SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3) 34 0.095
SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 31 0.67
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021) 31 0.89
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41) 31 0.89
SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093) 31 0.89
SB_47047| Best HMM Match : DUF761 (HMM E-Value=3.2) 30 1.5
SB_50329| Best HMM Match : 7tm_1 (HMM E-Value=0) 30 2.0
SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33) 30 2.0
SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019) 29 2.7
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 29 4.7
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 28 6.2
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 52.4 bits (120), Expect = 3e-07
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +1
Query: 64 IHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSI 216
I ++D + AG +LVVIDF ATWCGPCK I P ++ + D +
Sbjct: 11 IVVEDDSFFSVEIERAGSRLVVIDFTATWCGPCKSIAPVFTNLSMKFMDVV 61
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 255 ASEYNINSMPTFVFVKNGKKLDEFSGAN 338
A I +MPTF F N K+DE GA+
Sbjct: 74 AESCGIRAMPTFHFYHNKAKIDELRGAD 101
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 50.0 bits (114), Expect = 2e-06
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +1
Query: 115 DKLVVIDFMATWCGPCKMIGPKLDEIAAE 201
+++ IDF ATWCGPC+MIGPK +E+A E
Sbjct: 11 NEVAAIDFTATWCGPCRMIGPKFEEMAKE 39
>SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +1
Query: 70 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAE 201
I++ + + + DKLVVIDF A WCGPC+ I PK ++A E
Sbjct: 15 IEERAEFNSVINNTKDKLVVIDFYAEWCGPCRQIKPKFKKMALE 58
>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
Length = 308
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 52 PKMSIHIKDSDDLKT-RLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSI 216
P+ ++ + + D T L AG KLVV DF A+WCGPCK I P ++ + ++
Sbjct: 5 PRGNVKVLELDSQFTAELTNAGTKLVVADFTASWCGPCKSIAPVYSGLSEKYKQAV 60
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 255 ASEYNINSMPTFVFVKNGKKLDEFSGAN 338
A++ + +MPTF F KN K+DE GA+
Sbjct: 73 AAKQGVTAMPTFQFFKNKVKVDEVRGAD 100
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 58 MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAE 201
+S + D D + AG +++++F A WCG CK + P+ E AAE
Sbjct: 536 LSSDVLDLGDSNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEY-ETAAE 582
Score = 37.9 bits (84), Expect = 0.008
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 118 KLVVIDFMATWCGPCKMIGPKLDEIAAEMSD 210
K V+I+F A WCG CK + PK +E+ ++ D
Sbjct: 881 KDVLIEFYAPWCGHCKSLEPKYNELGEKLQD 911
>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
Length = 70
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 58 MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAE 201
+S + D D + AG +++++F A WCG CK + P+ E AAE
Sbjct: 11 LSSDVLDLGDSNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEY-ETAAE 57
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 109 AGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSI 216
A + V+DF A WCGPC PK +++A + +
Sbjct: 449 ASEDAWVVDFYAPWCGPCMRFAPKYEQLAKMLKGKV 484
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 37.1 bits (82), Expect = 0.013
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 100 LAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSD 210
+A DK V ++F A WCG CK + P D++ + D
Sbjct: 397 VARNKDKNVFVEFYAPWCGHCKQLAPIWDQLGEKYKD 433
Score = 35.9 bits (79), Expect = 0.031
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 103 AEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEM 204
A A +K V+++F A WCG CK + P+ + A ++
Sbjct: 37 AVAANKHVLVEFYAPWCGHCKALAPEYAKAAGQL 70
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 36.7 bits (81), Expect = 0.018
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +1
Query: 115 DKLVVIDFMATWCGPCKMIGPKLDEIAAEM 204
+ L++++F A WCG CK + P+ ++ A E+
Sbjct: 193 ESLMLVEFFAPWCGHCKQLAPEYEKAAQEL 222
Score = 34.3 bits (75), Expect = 0.095
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = +1
Query: 61 SIHIKDSDDLKTRLAEAGDK------LVVIDFMATWCGPCKMIGPKLDEIAAEM 204
S +K+ DD+ ++ D+ +++++F A WCG CK + P+ + A +M
Sbjct: 54 SDEVKEEDDVSVLNSKNFDRVIEENNIILVEFYAPWCGHCKSLAPEYAKAAKKM 107
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 36.3 bits (80), Expect = 0.024
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 112 GDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDS 213
G+K +++F A WCG CK + P +++ + S
Sbjct: 38 GEKFALVEFYAPWCGHCKQLAPTYEQLGEAYTQS 71
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 35.5 bits (78), Expect = 0.041
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 82 DDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEM 204
DD A K V++DF A WC CK + P ++A E+
Sbjct: 140 DDSNFEPAVQKHKFVLVDFYAPWCFHCKKMAPDYKDVAKEL 180
Score = 34.3 bits (75), Expect = 0.095
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 115 DKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDS 213
++ V++DF A WC C+ + P D A ++ D+
Sbjct: 68 NEYVLVDFYAPWCSDCQRLSPLFDTAALQLRDN 100
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 261 EYNINSMPTFVFVKNGKKLDEFSGAN 338
+YN+ +PT +GK ++EF G N
Sbjct: 208 KYNVKFLPTIYLFHDGKFVEEFEGNN 233
>SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 35.1 bits (77), Expect = 0.054
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 142 ATWCGPCKMIGPKLDEIAAEMSDSI 216
A WC PCK++ P+LD I AE +
Sbjct: 46 ACWCNPCKVLTPRLDAIIAEQDGKV 70
>SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3)
Length = 222
Score = 34.3 bits (75), Expect = 0.095
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 100 LAEAGDKLVVIDFMATWCGPCKMIGP 177
L E+ K+ +IDF A+WC PC++ P
Sbjct: 172 LKESMGKVTIIDFWASWCQPCRVENP 197
>SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 33.9 bits (74), Expect = 0.13
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 148 WCGPCKMIGPKLDEIAAEMSDSI 216
WC PCK++ P+LD I AE +
Sbjct: 2 WCNPCKVLTPRLDAIIAEQDGKV 24
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 31.5 bits (68), Expect = 0.67
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 121 LVVIDFMATWCGPCKMIGPKLDEIAAEMSDSI 216
L +++F A WCG C+ + P+ + A E+ +
Sbjct: 99 LWLVEFFAPWCGHCQRLAPEWAKAATELKGKV 130
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 31.1 bits (67), Expect = 0.89
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +1
Query: 118 KLVVIDFMATWCGPCKMIGPKLDEIAAEMS 207
+++++DF A WC C + PK ++ A +++
Sbjct: 40 EVMLVDFYAPWCSDCDNLRPKYEKAARDLA 69
>SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021)
Length = 293
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 115 DKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDS 213
+K+V I F A+WC PC+ P L + E S
Sbjct: 154 NKVVAIYFSASWCPPCQKFTPLLKDFYEEKIQS 186
>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
Length = 271
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 124 VVIDFMATWCGPCKMIGPKLDEIAAEMSD 210
V++ F A WCG CK PK ++ A D
Sbjct: 167 VLVMFYAPWCGHCKNAKPKYEKAAETFKD 195
>SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093)
Length = 148
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +1
Query: 91 KTRLAEAGD----KLVVIDFMATWCGPCKMIGPKLDEIAAEM 204
K L +AG+ K++ + F A WC PC+ P L + E+
Sbjct: 13 KGELVDAGEAVKGKVIAVYFSAHWCPPCRQFTPILKDFYEEL 54
>SB_47047| Best HMM Match : DUF761 (HMM E-Value=3.2)
Length = 389
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 197 AAISSSLGPIILHGPHQVAMKSITTSLSPASASLVFRSSESL 72
+A SS + P++ H H V+ + ++ P S++ S E L
Sbjct: 338 SAQSSPINPVVYHDNHDVSTSGVKSATCPVCESVIHGSGEEL 379
>SB_50329| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 334
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -3
Query: 203 ISAAISSSLGPIILHGPHQVAMKSITTSLSPA-SASLVFRSSESLM*MDILGFYTNARIS 27
+SAA S GP+ L PH I T+L+ A ++F L+ +++L F+ A++S
Sbjct: 212 VSAAAVS--GPVCLRKPHSAMKSEIKTALTLAVVVGVLFLFWTPLVFLNLLSFFRGAQVS 269
>SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)
Length = 386
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 118 KLVVIDFMATWCGPCKMIGPKLDEIAAEMSD 210
K V++ F A WCG CK P+L A D
Sbjct: 213 KHVLVMFYAPWCGHCKKAKPELMSAAKHHKD 243
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 52 PKMSIHIKDS--DDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSD 210
P +H++D DD + + V++ F A WCG CK + P+ + A + +
Sbjct: 81 PSEVVHLRDDMFDDFVAK-----NPSVLVMFYAPWCGHCKAMKPEYVDAAQTLKE 130
>SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019)
Length = 415
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 118 KLVVIDFMATWCGPCKMIGPKLDE 189
K+V + F A WC PC+ PKL E
Sbjct: 30 KIVGLYFSAHWCPPCRGFTPKLVE 53
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +1
Query: 109 AGD---KLVVIDFMATWCGPCKMIGPKL 183
AGD K+V I F A WC PC+ P+L
Sbjct: 168 AGDLKGKIVGIYFSAHWCPPCRAFTPEL 195
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 539 FFAFQRLQTQKLISSNSLQTLKTFFIHLLKT 447
F +R + KL+SSNS+ LK +HLL++
Sbjct: 803 FSKVERKKEGKLVSSNSMSKLKQKVVHLLES 833
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 126 DELVACFRQPCLQVVGIFDVNGHLGFLYKCT 34
+EL +C R PC D+N L Y C+
Sbjct: 167 EELNSCLRSPCQNQATCLDINAGLRDAYNCS 197
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,560,716
Number of Sequences: 59808
Number of extensions: 361657
Number of successful extensions: 854
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -