Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0854
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   1.2  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    24   1.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   3.6  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   3.6  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   3.6  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   3.6  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   3.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   4.8  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -2

Query: 540 IFCIPEAANTKINIFKFITDVKNIFYSFIKNVYM 439
           +F I +   +K+ I+K+   + +I ++  K V+M
Sbjct: 80  MFLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 113


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -2

Query: 540 IFCIPEAANTKINIFKFITDVKNIFYSFIKNVYM 439
           +F I +   +K+ I+K+   + +I ++  K V+M
Sbjct: 63  MFLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 96


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 388 LVSIYLCLRIVVLSLSTLAPE 326
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 388 LVSIYLCLRIVVLSLSTLAPE 326
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = +2

Query: 557 SNNSINKTRY*LII----YNPKLYFYFGFFYQVVAKGTLMYG 670
           SNN+I+   Y        YN KLY+   +  Q+     + YG
Sbjct: 86  SNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYG 127


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = +2

Query: 557 SNNSINKTRY*LII----YNPKLYFYFGFFYQVVAKGTLMYG 670
           SNN+I+   Y        YN KLY+   +  Q+     + YG
Sbjct: 86  SNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYG 127


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = +2

Query: 557 SNNSINKTRY*LII----YNPKLYFYFGFFYQVVAKGTLMYG 670
           SNN+I+   Y        YN KLY+   +  Q+     + YG
Sbjct: 86  SNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYG 127


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = +2

Query: 557 SNNSINKTRY*LII----YNPKLYFYFGFFYQVVAKGTLMYG 670
           SNN+I+   Y        YN KLY+   +  Q+     + YG
Sbjct: 86  SNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYG 127


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 180 FRPDHLARSAPGRHEVDHDELVAC 109
           F+P  L   A G HE  ++ ++ C
Sbjct: 37  FQPSFLGMEACGIHETTYNSIMKC 60


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 227 RWTLMSARTCQRVQH*LDADVRLR*EWQETGRILWR*RRQTQNNY 361
           R T++  RT + ++H  D   +L+  W++   I  R RR+ +  Y
Sbjct: 8   RPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQY 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,136
Number of Sequences: 438
Number of extensions: 3894
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)