Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0853
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   1.0  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   5.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   5.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.2  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   7.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.2  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 668 RNSEPSIQD*RHHR*NGVNRAAGHYRE 588
           RN++PS  + R H  NG N +  H+R+
Sbjct: 365 RNNQPSTSNNRWHNNNG-NNSNNHWRK 390


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 465 EVCGN-FHSR-YLGSKNGVRFQNPPLNGHRGCDNCHRRET 352
           ++CG  F ++  L +  GV    PP+     C  CH++ T
Sbjct: 166 KICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFT 205


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 199 PPVKTHSLAVYYSVGNLRHGQIMAQ 273
           PP   HSL  + + GN+ + Q  +Q
Sbjct: 3   PPEAVHSLERFCTYGNVNYRQRRSQ 27


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 598 IIESFLLCLFVIDIFIFFV 542
           ++ SF LCL    +FI ++
Sbjct: 295 VVLSFFLCLIPFRVFILWI 313


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 196  KPPVKTHSLAVYYSV 240
            KPPV+ + +  YY+V
Sbjct: 1222 KPPVEPNGIVEYYTV 1236


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 471 VEEVCGNFHSRYLGSKNG 418
           V E+C NF  RY+    G
Sbjct: 8   VHELCDNFCHRYISCLKG 25


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 471 VEEVCGNFHSRYLGSKNG 418
           V E+C NF  RY+    G
Sbjct: 164 VHELCDNFCHRYISCLKG 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,923
Number of Sequences: 336
Number of extensions: 4199
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)