Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0853
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    29   0.63 
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    28   1.1  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   4.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.9  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.8  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   7.8  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    25   7.8  

>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 479 FRSPLASLSRGDLPLFRASAFDKKDKNINHEQ 574
           F +   SLSR  LP F ++A D K+K+ NHE+
Sbjct: 745 FETTYQSLSRKSLPSFASTAAD-KEKSQNHEK 775


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 378 CDNCHRRETTYSQTHQRR 325
           C  CH+ E  + QTH RR
Sbjct: 75  CPRCHQHEAVFYQTHSRR 92


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +2

Query: 452 LPHTSSTTSFRSP--LASLSRGDL-PLFRASAFDKKDKNINHEQAEQKALDNVPPLYLRH 622
           +P  SS +S++    +  L+  +  PL   S+  K   N++   +E  A+       L  
Sbjct: 330 MPSISSVSSYQQQHRIPKLNASNYSPLLSPSSHRKTSGNLSRTGSESSAVSLSDTTNLNT 389

Query: 623 FTCDAVNPGCSARCSSPTS 679
              D  +PG S  CS+ +S
Sbjct: 390 PISDIPSPGSSTTCSNLSS 408


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 164  IGASRAMVSLLSRPLKLIRSPYIILSATYVTAKSWRSLLPAPPVWVC 304
            +GA  +MV   S P K      + +  T+ + K    +L + P WVC
Sbjct: 2329 VGAIASMVGKASSPSKFGPGD-VFIDFTHWSVKDGPQILASIPFWVC 2374


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 513 ISHFFVQALLTKKIKISITNRQSKK 587
           +SH F QAL++  +K+  T+ + +K
Sbjct: 217 VSHLFKQALISNGLKVKETSEEPEK 241


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 244 NLRHGQIMAQFITSASGLGMLLMVTLFPTLVSLGVSRLS 360
           NL+H +I   +    + +  LL++   P+LV L    +S
Sbjct: 316 NLKHLRITLSYFNKPTDIAKLLVIARIPSLVKLNDVNIS 354


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 504 DNDARGDRKLVVEEVCGNFHSRYLGSKNGVRFQNPP 397
           D   +GD  LV+   CG+ H +Y    N  +   PP
Sbjct: 203 DIPVKGDETLVI---CGDTHGQYFDLLNIFKLHGPP 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,437
Number of Sequences: 5004
Number of extensions: 66592
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)