Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0853
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0100 + 18121258-18121515,18121618-18121853,18122287-181223... 30 2.0
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 29 3.5
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 29 3.5
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272... 29 4.6
01_01_0564 - 4152189-4153643 28 6.1
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595 28 8.0
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970 28 8.0
01_04_0144 - 16703232-16704049,16704148-16704331 28 8.0
01_01_0031 + 240908-241091,241199-241977 28 8.0
>01_05_0100 +
18121258-18121515,18121618-18121853,18122287-18122305,
18123240-18123325,18123416-18123510,18124154-18124383
Length = 307
Score = 29.9 bits (64), Expect = 2.0
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Frame = +2
Query: 23 VDLDPTKSSGYLIVDIYNEILRMLSNRIAGLGLSIMAVGG----YARYMERIG--ASRAM 184
VD + ++ + + D++ E R S AG+ L + G Y Y+ I A+
Sbjct: 99 VDAEREEAPHFFLRDVW-EAYREWSAYGAGVPLVLDGCDGVVQYYVPYLSAIQLYGDPAV 157
Query: 185 VSLLSRPLKLIRSPYIILSATYVTAKSWRSLLPAPPVWVCC*WSPYFR 328
+ L S P I S LSA + ++ RS +P W+ W P +R
Sbjct: 158 LRLSSGPSDCIDSKISSLSARFPGLRTLRSCDLSPRSWISVAWYPIYR 205
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 338 LTSVGNKVTISNIPRPEALVINC 270
LTS G KVTISN P P+ +++ C
Sbjct: 2227 LTSAGFKVTISN-PNPDIVMVGC 2248
>04_04_0585 -
26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Frame = -2
Query: 537 ALARKSGRSPRDNDARGDRKLVVEEVCGNFHSRYLGSKNGVRFQNPPLNGHRG--CDNC- 367
A+ + GR R + + G V G H RY GSK F G G D+C
Sbjct: 129 AILIQCGRLSRSSSSSGK---VASGEGGGGHRRYSGSKRSYDFDRERRGGGGGGVDDDCD 185
Query: 366 -HRRETTYSQTHQRRK*GDHQQ---HTQTGGAGNK 274
R+ S+ RR+ + ++ H ++GG+G++
Sbjct: 186 WERQGAAVSRPSPRRRTPERKRSGSHERSGGSGSR 220
>05_07_0331 -
29324967-29326256,29326919-29327020,29327226-29327278,
29327628-29327674,29327762-29327841,29327933-29328016,
29328383-29328433,29328925-29329050,29329231-29329347,
29329710-29329851,29329986-29330053,29330509-29330608,
29330713-29330840,29330929-29330997,29331083-29331205
Length = 859
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Frame = -2
Query: 492 RGDRKL--VVEEVCGNFHSRYLGSKNGV 415
+G++K+ ++EE+CGN HS Y S++ V
Sbjct: 345 KGEKKVRSILEELCGNVHSIYWKSEDDV 372
>01_01_0564 - 4152189-4153643
Length = 484
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = +2
Query: 455 PHTSSTTSFRSPLASLSRGDLPLFRASAFDKKDKNINHEQAEQKALDNVPPLYLRHFTCD 634
P+ +FR +A LSRGD P A+ FD + Q +D VP + F
Sbjct: 212 PYAFVLDAFRDIVAVLSRGDRPTVLANTFDAMEPEA-VASLRQHGVDVVPVGPVLSFLDA 270
Query: 635 AVNPGCSARCSSPTS 679
A + G ++ TS
Sbjct: 271 AKSGGGGGAITTTTS 285
>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
Length = 904
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 111 DWGCRLWRWAVMPATW 158
D G R+WRW PA W
Sbjct: 574 DGGGRVWRWVCKPAIW 589
>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
Length = 371
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 303 VADGHLISDAGESGSKSSLCGGSYRNHDVH*VGDSGNELHFCCPGSGN 446
+A + G+SG+ S + GG +HDV V + ++ F +GN
Sbjct: 286 IASTSRVCTPGQSGTCSPVMGGMPAHHDVQMVDGAPDDFAFGSSSNGN 333
>01_04_0144 - 16703232-16704049,16704148-16704331
Length = 333
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 137 PPP*STAPIRQCGWTACAGFH 75
PPP S P RQ W C FH
Sbjct: 152 PPPSSAEPPRQDDWAVCRIFH 172
>01_01_0031 + 240908-241091,241199-241977
Length = 320
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 137 PPP*STAPIRQCGWTACAGFH 75
PPP S P RQ W C FH
Sbjct: 149 PPPSSAEPPRQDDWAVCRIFH 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,416,743
Number of Sequences: 37544
Number of extensions: 555869
Number of successful extensions: 1724
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1724
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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