Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0853
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot...    31   1.0  
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot...    31   1.0  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    31   1.0  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    31   1.0  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    29   4.1  
U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related...    28   5.5  
Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla...    27   9.6  
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ...    27   9.6  

>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
            protein.
          Length = 2693

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = +1

Query: 103  HCRIGAVDYGGG--RLCPLHGAHRGQSRD-----GELVKPPVKTHSLA 225
            HC +  VD G    RL P+    R +SR      GE+ +PPV T  LA
Sbjct: 949  HCTVKVVDMGLSKTRLTPVRSRSRSRSRSPSVVGGEIQRPPVVTRPLA 996


>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
            protein.
          Length = 2708

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = +1

Query: 103  HCRIGAVDYGGG--RLCPLHGAHRGQSRD-----GELVKPPVKTHSLA 225
            HC +  VD G    RL P+    R +SR      GE+ +PPV T  LA
Sbjct: 964  HCTVKVVDMGLSKTRLTPVRSRSRSRSRSPSVVGGEIQRPPVVTRPLA 1011


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = +1

Query: 103   HCRIGAVDYGGG--RLCPLHGAHRGQSRD-----GELVKPPVKTHSLA 225
             HC +  VD G    RL P+    R +SR      GE+ +PPV T  LA
Sbjct: 16775 HCTVKVVDMGLSKTRLTPVRSRSRSRSRSPSVVGGEIQRPPVVTRPLA 16822


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = +1

Query: 103   HCRIGAVDYGGG--RLCPLHGAHRGQSRD-----GELVKPPVKTHSLA 225
             HC +  VD G    RL P+    R +SR      GE+ +PPV T  LA
Sbjct: 16790 HCTVKVVDMGLSKTRLTPVRSRSRSRSRSPSVVGGEIQRPPVVTRPLA 16837


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 518  PLFRASAFDKKDKNINHEQAEQKALDNVPPLYLRHFTCDA--VNPGCSARCS 667
            P+  +   +KK   I +   E  A+  V P   +  TC    +NPGC+ +CS
Sbjct: 1395 PILSSLKIEKKASKIENVIVEHHAVLPVSPAPGKLGTCPKLLINPGCTEQCS 1446


>U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related
           family protein 5 protein.
          Length = 961

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 226 VYYSVGNLRHGQIMAQFITSASGLGMLLMV 315
           V YSVG   H  ++  F+ S + LGM  MV
Sbjct: 63  VGYSVGRYPHAYLIVAFLISINSLGMYRMV 92


>Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical
           protein T25G3.3 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 500 LSRGDLPLFRASAFDKKDKNINHEQAEQKALDNVP 604
           LS GDL +    AFD K+ N+N+   +   +DNVP
Sbjct: 369 LSPGDLVM----AFDMKNCNVNNATFDAMNIDNVP 399


>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
           protein 8 protein.
          Length = 1206

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 435 GSGNENCHILLPLPASGRLLRHYLGAISHFFVQALLTKK 551
           G  NE C   L +  +  +L   + A+S FF Q +L K+
Sbjct: 523 GYRNERCDYTLIIIGAALILLFIVAAVSAFFAQKILEKR 561


>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
           guanyly cyclase protein.
          Length = 1152

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 435 GSGNENCHILLPLPASGRLLRHYLGAISHFFVQALLTKK 551
           G  NE C   L +  +  +L   + A+S FF Q +L K+
Sbjct: 497 GYRNERCDYTLIIIGAALILLFIVAAVSAFFAQKILEKR 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,446,633
Number of Sequences: 27780
Number of extensions: 399445
Number of successful extensions: 1178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)