Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0853
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    26   0.29 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.3  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 265 MAQFITSASGLGMLLMVTLFPTLVSLGVSRLSAVAVIATTMSIEWGILETNSI 423
           +AQ    + G+G ++ V+   TL S+G + + + A+I   + +    L TN I
Sbjct: 411 IAQMNGISLGIGEVITVSFTATLASIGAASIPSAALITMLIVLTALGLPTNDI 463


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 491 LASLSRGDLPLFRASAFDKKDKNINHEQAEQKALDNVPPLYLRHFTCDAVNPG--CSARC 664
           L  ++R D  +++     ++ +    + + +  L N PP+ L  F    + PG   S +C
Sbjct: 386 LNGINREDRGMYQCIV--RRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKC 443

Query: 665 SS 670
           S+
Sbjct: 444 SA 445


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 491 LASLSRGDLPLFRASAFDKKDKNINHEQAEQKALDNVPPLYLRHFTCDAVNPG--CSARC 664
           L  ++R D  +++     ++ +    + + +  L N PP+ L  F    + PG   S +C
Sbjct: 386 LNGINREDRGMYQCIV--RRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKC 443

Query: 665 SS 670
           S+
Sbjct: 444 SA 445


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 471 VEEVCGNFHSRYLGSKNGVRFQNPPLNGHRGCDNCHR 361
           ++++     S  + SKNGV F     N   GC N H+
Sbjct: 299 IQDIFNTQSSAKVMSKNGVLFFGLVNNSAIGCWNEHQ 335


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 635 AVNPGCSARCSSPTS 679
           A  PGCS++   PTS
Sbjct: 890 ASTPGCSSKNGEPTS 904


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,784
Number of Sequences: 438
Number of extensions: 5358
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)