Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0853
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61540.2 68418.m07723 L-asparaginase, putative / L-asparagine...    31   0.54 
At5g61540.1 68418.m07722 L-asparaginase, putative / L-asparagine...    31   0.54 
At4g40020.1 68417.m05666 hypothetical protein                          31   0.72 
At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase ...    31   0.95 
At2g15390.2 68415.m01761 xyloglucan fucosyltransferase, putative...    31   0.95 
At2g15390.1 68415.m01760 xyloglucan fucosyltransferase, putative...    31   0.95 
At3g55030.1 68416.m06111 phosphatidylglycerolphosphate synthase,...    29   2.9  
At1g77780.1 68414.m09057 glycosyl hydrolase family 17 protein si...    29   2.9  
At1g64140.1 68414.m07266 expressed protein similar to putative d...    29   2.9  
At1g17230.1 68414.m02099 leucine-rich repeat family protein / pr...    28   5.1  
At5g44230.1 68418.m05411 pentatricopeptide (PPR) repeat-containi...    27   8.9  
At1g61065.1 68414.m06875 expressed protein                             27   8.9  
At1g25570.1 68414.m03174 leucine-rich repeat protein-related  co...    27   8.9  

>At5g61540.2 68418.m07723 L-asparaginase, putative / L-asparagine
           amidohydrolase, putative similar to Swiss-Prot:O02467
           N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase
           (Glycosylasparaginase)
           (Aspartylglucosaminidase)(N4-(N-acetyl-beta-
           glucosaminyl)-L-asparagine amidase) (AGA)[Spodoptera
           frugiperda]
          Length = 257

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 478 AGSGRSMWQFSFPLPGQQKWSSFPESPTQWTSW 380
           AG G S +  S  LPG    SS PES  +W+ W
Sbjct: 32  AGEGASAFAISMGLPGPMNLSS-PESVKKWSDW 63


>At5g61540.1 68418.m07722 L-asparaginase, putative / L-asparagine
           amidohydrolase, putative similar to Swiss-Prot:O02467
           N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase
           (Glycosylasparaginase)
           (Aspartylglucosaminidase)(N4-(N-acetyl-beta-
           glucosaminyl)-L-asparagine amidase) (AGA)[Spodoptera
           frugiperda]
          Length = 359

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 478 AGSGRSMWQFSFPLPGQQKWSSFPESPTQWTSW 380
           AG G S +  S  LPG    SS PES  +W+ W
Sbjct: 134 AGEGASAFAISMGLPGPMNLSS-PESVKKWSDW 165


>At4g40020.1 68417.m05666 hypothetical protein
          Length = 615

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 22/94 (23%), Positives = 42/94 (44%)
 Frame = -2

Query: 543 SKALARKSGRSPRDNDARGDRKLVVEEVCGNFHSRYLGSKNGVRFQNPPLNGHRGCDNCH 364
           +K   ++S +  +++  + + K   E+   NF  R +G      F    L  H   ++ H
Sbjct: 410 NKKEKKESKKEKKEHSEKKEDKEKKEQTHQNFDKRMIGKT--CSFSIMKL-AHHNHNHKH 466

Query: 363 RRETTYSQTHQRRK*GDHQQHTQTGGAGNKLRHD 262
            +ET+  +T      G+HQ+++   G GN    D
Sbjct: 467 NKETSEEETKNANG-GNHQENSDESGEGNSPSSD 499


>At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase
           (PGS1) identical to phosphatidylglycerolphosphate
           synthase GI:13365519 from [Arabidopsis thaliana]
          Length = 296

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +1

Query: 253 HGQIMAQFITSASGLGMLLMVTLFPTLVSLGVSRLSAVAVIATTMSIE--WGILETNSIF 426
           HGQ+ +   +S         V   PT+++LG  R++AV ++  T  ++  WG   T SIF
Sbjct: 84  HGQLDSDDNSSPPPSQSSSKVLTLPTVLTLG--RVAAVPLLVATFYVDSWWGTTATTSIF 141

Query: 427 AA 432
            A
Sbjct: 142 IA 143


>At2g15390.2 68415.m01761 xyloglucan fucosyltransferase, putative
           (FUT4) identical to SP|Q9SJP2 Probable
           fucosyltransferase 4 (EC 2.4.1.-) (AtFUT4) {Arabidopsis
           thaliana}; similar to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 500

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 398 HSMDIVVAITATAERRLTPRL-TSVGNKVTISNIPRPEALVI 276
           H MD V  I+ T   +L P L T   +KV ISNIP+ +A+++
Sbjct: 315 HVMDQV--ISCTQREKLLPELATQEESKVNISNIPKSKAVLV 354


>At2g15390.1 68415.m01760 xyloglucan fucosyltransferase, putative
           (FUT4) identical to SP|Q9SJP2 Probable
           fucosyltransferase 4 (EC 2.4.1.-) (AtFUT4) {Arabidopsis
           thaliana}; similar to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 503

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 398 HSMDIVVAITATAERRLTPRL-TSVGNKVTISNIPRPEALVI 276
           H MD V  I+ T   +L P L T   +KV ISNIP+ +A+++
Sbjct: 318 HVMDQV--ISCTQREKLLPELATQEESKVNISNIPKSKAVLV 357


>At3g55030.1 68416.m06111 phosphatidylglycerolphosphate synthase,
           putative similar to phosphatidylglycerolphosphate
           synthase GI:13365519 from [Arabidopsis thaliana];
           contains non-consensus CG acceptor splice site at exon 4
          Length = 233

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 313 VTLFPTLVSLGVSRLSAVAVIATTMSIE--WGILETNSIFAA 432
           V   PT+++LG  R++AV ++  T  ++  WG   T SIF A
Sbjct: 40  VITLPTVLTLG--RVAAVPILVATFYVDCWWGRTATTSIFIA 79


>At1g77780.1 68414.m09057 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase precursor GI:4097946 from
           [Oryza sativa]
          Length = 363

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 178 RDGELVKPPVKTHSLAVYYSVGNLRHGQIMAQFITSASGLGMLLMV 315
           R+G+ +  P KT SL    +VG +R  +     I S  G G+L+ +
Sbjct: 30  RNGDNLPSPAKTVSLYKKINVGGIRLYEPFPDLIVSLQGTGLLVAI 75


>At1g64140.1 68414.m07266 expressed protein similar to putative
           disease resistance protein GB:CAB40943 GI:4586107 from
           [Arabidopsis thaliana]; weak similarity to Loricrin
           (Swiss-Prot:P23490) [Homo sapiens]
          Length = 646

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 121 VDYGGGRLCPLHGAHRG 171
           + +GGGR C  HG H+G
Sbjct: 276 ISHGGGRRCQKHGCHKG 292


>At1g17230.1 68414.m02099 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 1133

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +2

Query: 14  IDTVDLDPTKSSGYLIVD----IYNEILRMLSNRIAG 112
           I  +DL   K SGY+  +    +Y EILR+  NR+ G
Sbjct: 549 IQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTG 585


>At5g44230.1 68418.m05411 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 657

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 585 FCSACS*LIFLSFLSKA--LARKSGRSPRDNDARGDRKLVVEEVCGN 451
           + SAC+ L    +  +A  +A+KSG SP D+   G   + +   CGN
Sbjct: 287 YISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGN 333


>At1g61065.1 68414.m06875 expressed protein
          Length = 180

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 66  IFIMKSCACCPTALPDWGCRLWRWAVMPATW 158
           I +   C CC  AL   G R W   +   TW
Sbjct: 68  IMVASRCLCCGRALTPSGSRSWAIFLFITTW 98


>At1g25570.1 68414.m03174 leucine-rich repeat protein-related
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to light
           repressible receptor protein kinase [Arabidopsis
           thaliana] gi|1321686|emb|CAA66376
          Length = 628

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 484 PEAGSGRSMWQFSFPLPGQQKWSSFPESPTQWTSW 380
           PE  +     + S  +P +  W+  P +PT W +W
Sbjct: 374 PEQVTAMKALKDSLRVPDRMGWNGDPCAPTSWDAW 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,012
Number of Sequences: 28952
Number of extensions: 387238
Number of successful extensions: 1133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)