Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0852
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.1  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    21   7.2  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    21   7.2  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   7.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 399  PNSTKFKKACYFSNF 443
            P S  FK  CYF+N+
Sbjct: 1393 PQSGYFKIVCYFTNW 1407


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 434 KITGLFELCTIWTIAEQNP 378
           ++TGL EL  + ++ E+NP
Sbjct: 74  EMTGLEELAHLMSLKEKNP 92


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 434 KITGLFELCTIWTIAEQNP 378
           ++TGL EL  + ++ E+NP
Sbjct: 74  EMTGLEELAHLMSLKEKNP 92


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = +1

Query: 394 IVQIVQSSKRPVILVTSSFSCPHLQR 471
           ++++ +  K+P++ V S+ SC +L+R
Sbjct: 214 LLRLPKFKKKPLLCVVSTLSC-YLER 238


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 305 LFCEKFIECFLSECFSVYHFSQPFSLFYRVFW 210
           L C  +  C L     +Y+F + F +F   F+
Sbjct: 282 LLCIYYFYCALIILLCIYYFCRAFIIFPTHFY 313


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 379 HHLVQKRYQHHQ 344
           HH+ ++  QHHQ
Sbjct: 169 HHMQEQHPQHHQ 180


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 379 HHLVQKRYQHHQ 344
           HH+ ++  QHHQ
Sbjct: 171 HHMQEQHPQHHQ 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,779
Number of Sequences: 336
Number of extensions: 3155
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)