Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0852
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 48 2e-06
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 35 0.013
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 32 0.068
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 31 0.16
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 0.48
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 29 0.64
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 29 0.84
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 28 1.1
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 28 1.5
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 28 1.5
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 4.5
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 26 4.5
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 26 4.5
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 26 5.9
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.9
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha... 25 7.9
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 7.9
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/49 (40%), Positives = 35/49 (71%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRT 154
G GKTS +YA+ EL +V+E++ +R+GK +L+ + E T+SH V+++
Sbjct: 435 GIGKTSCLYAICRELNFEVVEIHPGMRRSGKELLERIGELTQSHIVDKS 483
Score = 29.9 bits (64), Expect = 0.36
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 361 VFEQDDGFCSAIVQIVQSSKRPVIL 435
+F+ D GF A+ +++ SKRPV++
Sbjct: 501 LFQDDRGFWQAVSTLIEKSKRPVVM 525
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 34.7 bits (76), Expect = 0.013
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSH 139
G+GKT+ + +A + KV+E+NAS R + + + A +H
Sbjct: 426 GAGKTTLAHVIAHQAGYKVLEINASDDRTAHTVHEKVSSAISNH 469
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 32.3 bits (70), Expect = 0.068
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +3
Query: 408 TKFKKACYFSNFFIFMSTSTKIFAEWENFKIQPTMPRLLGPWLDVMCLVENGSCYPGTGA 587
TK + C N+ +S + I + F+ QP P+ + +D + E+ + P
Sbjct: 148 TKNVRFCIICNYINKISPA--IQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKM 205
Query: 588 RFLDYFKGDIRKTINCLQ 641
L KGD+RK +N LQ
Sbjct: 206 AVLRLSKGDMRKALNILQ 223
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 31.1 bits (67), Expect = 0.16
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Frame = +2
Query: 8 GSGKTSSVYAVAAEL------AIKVIEVNASTKRNGKIILQDLREATKSHKVNR 151
G+GKTS++ A++ EL +V+E+NAS +R II + ++ K+ N+
Sbjct: 62 GTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNK 115
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 29.5 bits (63), Expect = 0.48
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = +1
Query: 379 GFCSAIVQIVQSSKRPVILVTSSF---SCP---HLQRFLLSGKILKFNQLCLDCLV 528
G C I Q+ +SSK+P L T F + P HL +L+ I +F L D V
Sbjct: 5 GICRLIHQVSESSKKPYFLTTPIFYVNAAPHLGHLYSLVLTDAIARFQNLKPDVSV 60
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKV 145
G GKT++ + VA V+E+NAS R+ +++ + L T S +
Sbjct: 419 GIGKTTAAHLVAKLEGYDVLELNASDTRSKRLLDEQLFGVTDSQSL 464
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 28.7 bits (61), Expect = 0.84
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTK 88
GSGKTS +YA+A EL + +N + K
Sbjct: 252 GSGKTSFLYALAGELDYDICVLNLAEK 278
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANSFENS 175
G G T+SV AAEL ++ E+ + K + ++I+ R ATK+ A+S +NS
Sbjct: 92 GDG-TTSVCVFAAEL-LRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNS 145
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 361 VFEQDDGFCSAIVQIVQSSKRPVILVTSSFSCPHLQRFLLSGKI 492
++++DD CSAI + K+ +L + + + LL+ KI
Sbjct: 1249 IYDEDDAVCSAIEDSIAHLKKDEVLRSGALKQVQIMEVLLTKKI 1292
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +2
Query: 20 TSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANSFENSQKSQEIVI 199
T++ A A++ I I+ R+ IIL D E+ + K + +SF+ S S+ V+
Sbjct: 74 TNTWLAGASKYKIDEIKTLPKVPRDHYIILCDSSESNEIAKFTQVVHSFDFSSDSESAVV 133
Query: 200 QDV 208
+ +
Sbjct: 134 EQL 136
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -3
Query: 563 TIFNETHHIQPGTKQSRHSW-----LNFKIFPLSKN 471
++FN THH+Q +R W +++K LSKN
Sbjct: 1025 SVFNYTHHMQEEKTHNRLPWHRRGMISYKKMVLSKN 1060
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/80 (27%), Positives = 33/80 (41%)
Frame = +3
Query: 402 NSTKFKKACYFSNFFIFMSTSTKIFAEWENFKIQPTMPRLLGPWLDVMCLVENGSCYPGT 581
N+T+F AC SN I S + Q + RLL +C E +
Sbjct: 148 NTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLN-----ICKAEKVNYTDDG 202
Query: 582 GARFLDYFKGDIRKTINCLQ 641
A + +GD+R+ +N LQ
Sbjct: 203 LAALIMTAEGDMRQAVNNLQ 222
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 56 IKVIEVNASTKRNGKIILQDLREATKSHKVNRTANSFENSQ 178
+K++ +A ++R ++ ++D T S N+F NSQ
Sbjct: 593 LKMVSEDAKSQRIDELSVEDQEHTTHSSHTTSDINAFPNSQ 633
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 388 SAIVQIVQSSKRPVILVTSSFSCPHLQR 471
S I+++++ SK P ILV + S H+Q+
Sbjct: 206 SEILELIEKSKNPSILVDACVSRFHIQQ 233
>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 394 IVQIVQSSKRPVILVTSSFSCPHLQRFLLSGKILKFNQLCL 516
+++ ++ S +P+ ++ SSF+ PH + I K +QL L
Sbjct: 23 LLERLEVSDKPIYVLDSSFNPPHFAHLGMCLSIPKGSQLLL 63
>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
Tim9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 84
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 175 SKITRNCYSRCTQKTR*NKENG*EK**TEKHSDK--KHSINFSQNSQE 312
S +T+NC+S C Q +K + E K +DK KHS Q E
Sbjct: 29 STLTQNCFSDCVQDFTSSKLSNKESECIAKCADKFLKHSERVGQRFAE 76
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 524 WSLAGCDVSR*KWFLLSWNWCQIFRLLQRRHKKNNKLF 637
W +AGC S + S C++ R+ KK + LF
Sbjct: 778 WEVAGCVASTLIYHYCSMLGCRVIRMQGTLFKKKDALF 815
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,098
Number of Sequences: 5004
Number of extensions: 50099
Number of successful extensions: 152
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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