Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0852
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855... 34 0.093
08_02_0648 - 19694538-19696569,19697151-19697998 31 0.66
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433... 29 2.6
03_02_0466 - 8690469-8690522,8691008-8691113,8691216-8691457,869... 29 3.5
02_03_0217 + 16512689-16512838,16514353-16515444 29 3.5
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 28 6.1
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 28 8.1
02_03_0204 - 16369800-16371758,16372260-16372331 28 8.1
>03_02_0445 -
8551912-8552047,8552729-8552896,8553785-8554068,
8554143-8555386,8556901-8556967,8557059-8557150,
8557269-8557480,8558541-8558623,8559092-8559122,
8559770-8559951,8560557-8560616,8561092-8561289,
8561485-8561539,8562740-8562855,8563012-8563176,
8563310-8563483,8564134-8564333,8564778-8564882,
8565063-8565126,8566452-8566718
Length = 1300
Score = 34.3 bits (75), Expect = 0.093
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +1
Query: 361 VFEQDDGFCSAIVQIVQSSKRPVILVTSSFSCPHLQRFLLSGKILKF 501
VF++D GF S I+++V+++K P+IL TS+ P L LL+ +L F
Sbjct: 610 VFDEDRGFISTILKMVETTKWPIIL-TSNKKDPPLPH-LLAQLVLDF 654
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 71 VNASTKRNGKIILQDLREATKSHKVNR 151
VN S RNG + Q EATKSH + +
Sbjct: 540 VNTSDMRNGAYVRQKFEEATKSHGLEK 566
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 31.5 bits (68), Expect = 0.66
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -3
Query: 626 CF--SYVSFEVI*KSGTSSRIARTIFNETHHIQPGTKQSRHSWLNFKIFPLSKNLCRCGH 453
CF S S V+ + G ++ R + + H I G + R+ PL +LC+ G
Sbjct: 681 CFNCSKNSINVVLELGNIIKLKRLVIHWDHDIT-GEDEERYKK------PLVSSLCKLGQ 733
Query: 452 ENEEVTKITGLFELCTI 402
N ++ IT L+ CT+
Sbjct: 734 SNLQILNITRLYLYCTV 750
>02_05_0922 -
32742863-32742958,32743081-32743136,32743253-32743382,
32743768-32743849,32744038-32744227,32744290-32744369,
32744769-32744985,32745740-32745923
Length = 344
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Frame = +2
Query: 8 GSGKTSSVYAVAAEL-----AIKVIEVNASTKRNGKIILQDLREATKSHKVN 148
G+GKTS++ AVA +L ++E+NAS +R ++ Q +++ + ++
Sbjct: 81 GTGKTSTILAVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLS 132
>03_02_0466 -
8690469-8690522,8691008-8691113,8691216-8691457,
8691477-8691546,8692224-8692499,8693058-8693137,
8693408-8693489,8693566-8693663,8693868-8693936,
8694015-8694113,8694681-8694737,8694874-8695039,
8695152-8695196,8695286-8695347,8695425-8695532,
8695719-8695769,8695843-8695944,8696362-8696448,
8696560-8696823,8696977-8697189,8697337-8697398,
8697517-8697849,8697943-8698138
Length = 973
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANSFENSQKSQ 187
G GKT+ + A V+E+NAS R+ I + + + NS + K +
Sbjct: 365 GLGKTTLAHVAAKHCGYHVVEINASDDRSASSIEPKILDVIQ-------MNSIMSDSKPK 417
Query: 188 EIVIQDVPKKRGRTKKTVE 244
+VI ++ G K VE
Sbjct: 418 CLVIDEIDGALGDGKGAVE 436
>02_03_0217 + 16512689-16512838,16514353-16515444
Length = 413
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 98 KIILQDLREATKSHKVNRTANSFENSQKSQEIV 196
K IL++L + TK HK+ T + ENSQ ++
Sbjct: 192 KAILRELEKLTKLHKLGLTGVNKENSQAVMSVI 224
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKR 91
G GKT++ V+ L ++ IEVNAS R
Sbjct: 460 GIGKTTTAKVVSQMLGLQAIEVNASDSR 487
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +2
Query: 5 RGSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANSFENSQKS 184
RG GK SS++ + V+ + A + IL+DL+ T+ HK+ + + +NS+K
Sbjct: 1132 RGIGKLSSLHTLG------VVNIQACGEDG---ILEDLKNLTQLHKLGVSGINRKNSEKL 1182
Query: 185 QEIVIQ 202
++++
Sbjct: 1183 FSVILR 1188
>02_03_0204 - 16369800-16371758,16372260-16372331
Length = 676
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 95 GKIILQDLREATKSHKVNRTANSFENSQ 178
GK+IL++L + K HK+ T + +NSQ
Sbjct: 450 GKVILRELEKLKKLHKLGLTGVNKKNSQ 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,649,638
Number of Sequences: 37544
Number of extensions: 272916
Number of successful extensions: 659
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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