Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0852
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)                     59   4e-09
SB_34097| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.041
SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)                   31   0.89 
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)            29   2.7  
SB_10192| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_33644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_1934| Best HMM Match : CHB_HEX_C (HMM E-Value=8.5)                  28   6.2  

>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
          Length = 1199

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +2

Query: 5   RGSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKV 145
           RG+GKT+S+YA A EL  KV EVN ++KR+ K I+  L EAT+SH V
Sbjct: 647 RGAGKTASIYACAGELGYKVFEVNCTSKRSSKHIISQLEEATQSHLV 693


>SB_34097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +2

Query: 5   RGSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANSFEN 172
           RG+GKT+S+YA A EL  K +E +    +    ++ D+ E T++  +   A + E+
Sbjct: 37  RGAGKTASIYACAGELGYKDVECDTDASQG---VVSDMLEDTRTESMLAEAMTTES 89


>SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 8   GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKV 145
           G GKT+  + +A      V+E+NAS  R  ++  Q +  AT+   V
Sbjct: 390 GLGKTTLAHVIAQHAGYNVVEMNASDDRAVEVFRQKIEVATQMKSV 435


>SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)
          Length = 568

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 8   GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANS 163
           G GKT++   V  EL    +E+NAS  R+ K + Q + E+  +  ++    S
Sbjct: 281 GVGKTTTATLVCQELGYSYVEMNASDARSKKTLEQVVSESLSNKSMDAFVGS 332


>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/51 (29%), Positives = 31/51 (60%)
 Frame = +2

Query: 74  NASTKRNGKIILQDLREATKSHKVNRTANSFENSQKSQEIVIQDVPKKRGR 226
           NA++K N   I ++ ++    H   RTA +++  +  QE+V  ++P+K+G+
Sbjct: 64  NAASKYN---ITREEQDDYAIHSYRRTAAAWDAGKFKQEVVPVNIPQKKGK 111


>SB_10192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 381 ILFSYCPNSTKFKKACYFSNFFIFMSTSTKIFAEWENFKIQPTMPRLLGPW 533
           + F  C        A +    F++MST  +I   +E+  + PT+P + G W
Sbjct: 82  VYFKCCVPPPNISCASFLWAGFLWMSTQQQITTGYESVVVLPTVPPVHGLW 132


>SB_33644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 678

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
 Frame = +3

Query: 435 SNFFIFMSTSTKIFAEWEN---FKIQPTMPRLLGPWLDVMCLVENGSCYPGTGARFLDYF 605
           +N   F+  +T +F        F+       +L  WL  +C+V N    P   A   D F
Sbjct: 331 TNLLFFVVPNTVVFIVTTGTIYFETNAVANSMLRRWLPPICIVLNACMNPFLFAYRNDVF 390

Query: 606 KGDIRKTINCLQFYTSPVKIVANDGSS 686
           K  ++K +  +   +  +++  +D S+
Sbjct: 391 KTALKKQLGLVSSTSMSMRLTKSDNST 417


>SB_1934| Best HMM Match : CHB_HEX_C (HMM E-Value=8.5)
          Length = 280

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +2

Query: 5   RGSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANSFENSQKS 184
           RG   TS + A   +   + IE      R+G   LQDL EA    K++  A+    +  +
Sbjct: 78  RGEKLTSFIDAYEVQKEKEAIETAEKLMRDGANRLQDLTEAQAPEKMHTLADGTRVADVA 137

Query: 185 QEIVIQDVPKKRGRTKK 235
             + +    +KRG + K
Sbjct: 138 --VSVDGTWQKRGHSSK 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,852,431
Number of Sequences: 59808
Number of extensions: 346805
Number of successful extensions: 789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)