Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0852
(694 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY557611-1|AAT52049.1| 1844|Homo sapiens chromosome fragility as... 65 2e-10
AJ314648-1|CAC44537.2| 1844|Homo sapiens ATP(GTP)-binding protei... 65 2e-10
AK022797-1|BAB14248.1| 801|Homo sapiens protein ( Homo sapiens ... 62 2e-09
BC018184-1|AAH18184.1| 975|Homo sapiens CTF18, chromosome trans... 31 3.9
BC006437-1|AAH06437.1| 1016|Homo sapiens CHTF18 protein protein. 31 3.9
BC006278-1|AAH06278.2| 975|Homo sapiens CTF18, chromosome trans... 31 3.9
AL031033-2|CAB53056.1| 260|Homo sapiens protein ( Human DNA seq... 31 3.9
AE006465-2|AAK61256.1| 1184|Homo sapiens some homology with holl... 31 3.9
M87339-1|AAB09785.1| 363|Homo sapiens replication factor C, 37-... 30 9.0
CR536561-1|CAG38798.1| 363|Homo sapiens RFC4 protein. 30 9.0
BT006987-1|AAP35633.1| 363|Homo sapiens replication factor C (a... 30 9.0
BC024022-1|AAH24022.1| 363|Homo sapiens replication factor C (a... 30 9.0
BC017452-1|AAH17452.1| 363|Homo sapiens replication factor C (a... 30 9.0
AF538718-1|AAM97933.1| 363|Homo sapiens replication factor C (a... 30 9.0
>AY557611-1|AAT52049.1| 1844|Homo sapiens chromosome fragility
associated gene 1 protein.
Length = 1844
Score = 65.3 bits (152), Expect = 2e-10
Identities = 34/78 (43%), Positives = 48/78 (61%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANSFENSQKSQ 187
G GKT++VYA A EL K+ EVNAS++R+G+ IL L+EAT+SH+V++ + +
Sbjct: 1135 GVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFN 1194
Query: 188 EIVIQDVPKKRGRTKKTV 241
I PKK KK V
Sbjct: 1195 SYYIGKSPKKISSPKKVV 1212
Score = 33.9 bits (74), Expect = 0.55
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 361 VFEQDDGFCSAIVQIVQSSKRPVILVTS 444
+F++D GF +AI + ++KRPVIL TS
Sbjct: 1310 IFDEDAGFLNAIKTFMATTKRPVILTTS 1337
>AJ314648-1|CAC44537.2| 1844|Homo sapiens ATP(GTP)-binding protein
protein.
Length = 1844
Score = 65.3 bits (152), Expect = 2e-10
Identities = 34/78 (43%), Positives = 48/78 (61%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANSFENSQKSQ 187
G GKT++VYA A EL K+ EVNAS++R+G+ IL L+EAT+SH+V++ + +
Sbjct: 1135 GVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFN 1194
Query: 188 EIVIQDVPKKRGRTKKTV 241
I PKK KK V
Sbjct: 1195 SYYIGKSPKKISSPKKVV 1212
Score = 33.9 bits (74), Expect = 0.55
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 361 VFEQDDGFCSAIVQIVQSSKRPVILVTS 444
+F++D GF +AI + ++KRPVIL TS
Sbjct: 1310 IFDEDAGFLNAIKTFMATTKRPVILTTS 1337
>AK022797-1|BAB14248.1| 801|Homo sapiens protein ( Homo sapiens
cDNA FLJ12735 fis, clone NT2RP2000258, weakly similar to
ACTIVATOR 1 140 KD SUBUNIT. ).
Length = 801
Score = 61.7 bits (143), Expect = 2e-09
Identities = 31/58 (53%), Positives = 43/58 (74%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANSFENSQK 181
G GKT++VYA A EL K+ EVNAS++R+G+ IL L+EAT+SH+V++ NSQK
Sbjct: 732 GVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQG---VNSQK 786
>BC018184-1|AAH18184.1| 975|Homo sapiens CTF18, chromosome
transmission fidelity factor 18 homolog (S. cerevisiae)
protein.
Length = 975
Score = 31.1 bits (67), Expect = 3.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKV 145
G GKT+ + +A V+E+NAS R+ ++ + AT+ V
Sbjct: 377 GLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESV 422
>BC006437-1|AAH06437.1| 1016|Homo sapiens CHTF18 protein protein.
Length = 1016
Score = 31.1 bits (67), Expect = 3.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKV 145
G GKT+ + +A V+E+NAS R+ ++ + AT+ V
Sbjct: 418 GLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESV 463
>BC006278-1|AAH06278.2| 975|Homo sapiens CTF18, chromosome
transmission fidelity factor 18 homolog (S. cerevisiae)
protein.
Length = 975
Score = 31.1 bits (67), Expect = 3.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKV 145
G GKT+ + +A V+E+NAS R+ ++ + AT+ V
Sbjct: 377 GLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESV 422
>AL031033-2|CAB53056.1| 260|Homo sapiens protein ( Human DNA
sequence from clone LA16c-321D2 on chromosome 16
Contains a gene for a Ribosomal Large Subunit
Pseudouridine Synthase (EC ).
Length = 260
Score = 31.1 bits (67), Expect = 3.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKV 145
G GKT+ + +A V+E+NAS R+ ++ + AT+ V
Sbjct: 99 GLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESV 144
>AE006465-2|AAK61256.1| 1184|Homo sapiens some homology with
holliday junction DNA helicase RUVB like protein.
Length = 1184
Score = 31.1 bits (67), Expect = 3.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKV 145
G GKT+ + +A V+E+NAS R+ ++ + AT+ V
Sbjct: 572 GLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESV 617
>M87339-1|AAB09785.1| 363|Homo sapiens replication factor C, 37-kDa
subunit protein.
Length = 363
Score = 29.9 bits (64), Expect = 9.0
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 6/44 (13%)
Frame = +2
Query: 8 GSGKTSSVYAVAAEL------AIKVIEVNASTKRNGKIILQDLR 121
G+GKTS++ A A EL ++V+E+NAS +R +++ + ++
Sbjct: 81 GTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVK 124
>CR536561-1|CAG38798.1| 363|Homo sapiens RFC4 protein.
Length = 363
Score = 29.9 bits (64), Expect = 9.0
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 6/44 (13%)
Frame = +2
Query: 8 GSGKTSSVYAVAAEL------AIKVIEVNASTKRNGKIILQDLR 121
G+GKTS++ A A EL ++V+E+NAS +R +++ + ++
Sbjct: 81 GTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVK 124
>BT006987-1|AAP35633.1| 363|Homo sapiens replication factor C
(activator 1) 4, 37kDa protein.
Length = 363
Score = 29.9 bits (64), Expect = 9.0
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 6/44 (13%)
Frame = +2
Query: 8 GSGKTSSVYAVAAEL------AIKVIEVNASTKRNGKIILQDLR 121
G+GKTS++ A A EL ++V+E+NAS +R +++ + ++
Sbjct: 81 GTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVK 124
>BC024022-1|AAH24022.1| 363|Homo sapiens replication factor C
(activator 1) 4, 37kDa protein.
Length = 363
Score = 29.9 bits (64), Expect = 9.0
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 6/44 (13%)
Frame = +2
Query: 8 GSGKTSSVYAVAAEL------AIKVIEVNASTKRNGKIILQDLR 121
G+GKTS++ A A EL ++V+E+NAS +R +++ + ++
Sbjct: 81 GTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVK 124
>BC017452-1|AAH17452.1| 363|Homo sapiens replication factor C
(activator 1) 4, 37kDa protein.
Length = 363
Score = 29.9 bits (64), Expect = 9.0
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 6/44 (13%)
Frame = +2
Query: 8 GSGKTSSVYAVAAEL------AIKVIEVNASTKRNGKIILQDLR 121
G+GKTS++ A A EL ++V+E+NAS +R +++ + ++
Sbjct: 81 GTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVK 124
>AF538718-1|AAM97933.1| 363|Homo sapiens replication factor C
(activator 1) 4 (37kD) protein.
Length = 363
Score = 29.9 bits (64), Expect = 9.0
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 6/44 (13%)
Frame = +2
Query: 8 GSGKTSSVYAVAAEL------AIKVIEVNASTKRNGKIILQDLR 121
G+GKTS++ A A EL ++V+E+NAS +R +++ + ++
Sbjct: 81 GTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVK 124
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,993,884
Number of Sequences: 237096
Number of extensions: 1665837
Number of successful extensions: 2955
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2955
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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