Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0852
         (694 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118473-1|AAM49842.1| 1162|Drosophila melanogaster GM14375p pro...    54   2e-07
AE014296-2647|AAF49530.2| 1106|Drosophila melanogaster CG16838-P...    54   2e-07
AE014296-2646|AAN11762.2| 1162|Drosophila melanogaster CG16838-P...    54   2e-07
AF199369-2|AAF09580.1|  318|Drosophila melanogaster MEI-P22 prot...    29   4.5  
AE014296-1215|AAF50593.2|  331|Drosophila melanogaster CG14827-P...    29   7.9  

>AY118473-1|AAM49842.1| 1162|Drosophila melanogaster GM14375p
           protein.
          Length = 1162

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 21/47 (44%), Positives = 37/47 (78%)
 Frame = +2

Query: 11  SGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNR 151
           SGKT++V+ +A ++   V+E+NA  KR GK ++Q+L+EAT+SH++ +
Sbjct: 707 SGKTNAVFTLANDMNFNVLEINAGMKRTGKKLIQELQEATQSHQIRK 753



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 21/43 (48%), Positives = 27/43 (62%)
 Frame = +1

Query: 373 DDGFCSAIVQIVQSSKRPVILVTSSFSCPHLQRFLLSGKILKF 501
           D GF  AI  +  SSKRPVI+V +  +C HLQR L+   I+ F
Sbjct: 805 DAGFTDAIYTLAASSKRPVIVVATDPNCAHLQR-LMQQNIIHF 846


>AE014296-2647|AAF49530.2| 1106|Drosophila melanogaster CG16838-PD,
           isoform D protein.
          Length = 1106

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 21/47 (44%), Positives = 37/47 (78%)
 Frame = +2

Query: 11  SGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNR 151
           SGKT++V+ +A ++   V+E+NA  KR GK ++Q+L+EAT+SH++ +
Sbjct: 651 SGKTNAVFTLANDMNFNVLEINAGMKRTGKKLIQELQEATQSHQIRK 697



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 21/43 (48%), Positives = 27/43 (62%)
 Frame = +1

Query: 373 DDGFCSAIVQIVQSSKRPVILVTSSFSCPHLQRFLLSGKILKF 501
           D GF  AI  +  SSKRPVI+V +  +C HLQR L+   I+ F
Sbjct: 749 DAGFTDAIYTLAASSKRPVIVVATDPNCAHLQR-LMQQNIIHF 790


>AE014296-2646|AAN11762.2| 1162|Drosophila melanogaster CG16838-PC,
           isoform C protein.
          Length = 1162

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 21/47 (44%), Positives = 37/47 (78%)
 Frame = +2

Query: 11  SGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNR 151
           SGKT++V+ +A ++   V+E+NA  KR GK ++Q+L+EAT+SH++ +
Sbjct: 707 SGKTNAVFTLANDMNFNVLEINAGMKRTGKKLIQELQEATQSHQIRK 753



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 21/43 (48%), Positives = 27/43 (62%)
 Frame = +1

Query: 373 DDGFCSAIVQIVQSSKRPVILVTSSFSCPHLQRFLLSGKILKF 501
           D GF  AI  +  SSKRPVI+V +  +C HLQR L+   I+ F
Sbjct: 805 DAGFTDAIYTLAASSKRPVIVVATDPNCAHLQR-LMQQNIIHF 846


>AF199369-2|AAF09580.1|  318|Drosophila melanogaster MEI-P22 protein
           protein.
          Length = 318

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 86  KRNGKII-LQDLREATKSHKVNRTANSFENSQKSQEIVIQDVPKKRGRTKK 235
           K + KII L+ L E  K+ K         + + SQ   IQ  PKKRGR  K
Sbjct: 110 KPSYKIIHLKSLDEVEKTVKKKNNTQKEVHQRNSQRRSIQCTPKKRGRKPK 160


>AE014296-1215|AAF50593.2|  331|Drosophila melanogaster CG14827-PA
           protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 98  KII-LQDLREATKSHKVNRTANSFENSQKSQEIVIQDVPKKRGRTKK 235
           KII L+ L E  K+ K         + + SQ   IQ  PKKRGR  K
Sbjct: 114 KIIHLKSLDEVEKTVKKKNNIQKEVHQRNSQRRSIQCTPKKRGRKPK 160


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,406,047
Number of Sequences: 53049
Number of extensions: 507284
Number of successful extensions: 1450
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)