Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0852
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    38   0.007
Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical pr...    37   0.012
AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z81523-5|CAB04240.2|  298|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z81587-10|CAH10780.1|  483|Caenorhabditis elegans Hypothetical p...    27   9.6  
AL161712-20|CAC70138.1|  379|Caenorhabditis elegans Hypothetical...    27   9.6  

>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
           protein Y53F4B.9 protein.
          Length = 1168

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 17/48 (35%), Positives = 32/48 (66%)
 Frame = +2

Query: 8   GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNR 151
           G GKT+   A+A +  +++I +   T R+G  I ++L+EA +SH+V++
Sbjct: 826 GVGKTALFRALAKQENMRIISIGPETGRSGSEIKRNLQEALRSHRVDQ 873


>Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical
           protein C54G10.2 protein.
          Length = 839

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
 Frame = +2

Query: 8   GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANSF----ENS 175
           G GKT+  Y    +L ++++E+NAS  R+ K +   + E + SH++ +   +     +++
Sbjct: 350 GVGKTTCAYMACQQLGLQLVEMNASDVRSKKHLEAKIGELSGSHQIEQFFGAKKCAPQDN 409

Query: 176 QKSQEIVIQD 205
           QK   I+I D
Sbjct: 410 QKVHHILIMD 419


>AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical
           protein T26C12.1 protein.
          Length = 640

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +1

Query: 394 IVQIVQSSKRPVILVTSSFSCP 459
           IVQ+V+S+KRPV+L+ S  + P
Sbjct: 280 IVQLVKSAKRPVLLIGSQATLP 301


>Z81523-5|CAB04240.2|  298|Caenorhabditis elegans Hypothetical
           protein F32H2.4 protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 8   GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKV-NRTANSF 166
           GS  +SSV  VA       +  +AS  RN  I + D+R++  +H++ NR  N F
Sbjct: 43  GSSHSSSVEQVACSEKQPNLFASASADRN--ICVWDIRQSKPTHRISNRVGNFF 94


>AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical
           protein Y71H2B.5 protein.
          Length = 816

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -3

Query: 542 HIQPGTKQSRHSWLNFKI---FPLSKNLCRCGHENEEVTKITGLFELCTIWTIAEQNP 378
           H+Q   K+ R S  + KI   F  + NL     + + VTKI  +F+   IW  A   P
Sbjct: 48  HLQNVLKEIRESHGSIKIIGTFCAASNLTGILIDIQNVTKILKMFDAIAIWDFASAAP 105


>Z81587-10|CAH10780.1|  483|Caenorhabditis elegans Hypothetical
           protein T06G6.3b protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 688 LEEPSLATIFTGDV*NCKQFIVFLMSPLK*SKNLAPVPG*QEPFST 551
           +EE +  T+   D+ NCK  +      L   K  +PVPG QE   T
Sbjct: 38  VEEKAANTMLRNDLKNCKGMLKEQEELLAAEKRKSPVPGDQESEDT 83


>AL161712-20|CAC70138.1|  379|Caenorhabditis elegans Hypothetical
           protein Y66D12A.20 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 122 EATKSHKVNRTANSFENSQKSQEIVIQDVPKKRGRTK 232
           E  +SH+ +   ++ +N+ +S +I   D+P K G +K
Sbjct: 324 ELGESHQASAKLDAKDNANESMDIEFDDMPPKEGISK 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,746,039
Number of Sequences: 27780
Number of extensions: 289337
Number of successful extensions: 836
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)