Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0852
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    27   0.17 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   4.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   4.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   4.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   4.8  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   8.4  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 165 LKTLKNHKKLLFKMYPKNAVEQRKRLRKM 251
           L +L+NHK +  + + KN  +QRK + +M
Sbjct: 45  LNSLRNHKSIYHRQHSKNE-QQRKEMEQM 72


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 387 FSYCPNSTKFKKACYFS-NFFIFMSTSTKIFAEWENFKIQPTMPRLLGPWLDV 542
           + Y  N+  + K  Y++ N+   +     ++  + NF     +PR +GPW+ +
Sbjct: 95  YKYNYNNNNYNKKLYYNINYIEQIPIPVPVY--YGNF-----LPRPMGPWISI 140


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 387 FSYCPNSTKFKKACYFS-NFFIFMSTSTKIFAEWENFKIQPTMPRLLGPWLDV 542
           + Y  N+  + K  Y++ N+   +     ++  + NF     +PR +GPW+ +
Sbjct: 95  YKYNYNNNNYNKKLYYNINYIEQIPIPVPVY--YGNF-----LPRPMGPWISI 140


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 387 FSYCPNSTKFKKACYFS-NFFIFMSTSTKIFAEWENFKIQPTMPRLLGPWLDV 542
           + Y  N+  + K  Y++ N+   +     ++  + NF     +PR +GPW+ +
Sbjct: 95  YKYNYNNNNYNKKLYYNINYIEQIPIPVPVY--YGNF-----LPRPMGPWISI 140


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 387 FSYCPNSTKFKKACYFS-NFFIFMSTSTKIFAEWENFKIQPTMPRLLGPWLDV 542
           + Y  N+  + K  Y++ N+   +     ++  + NF     +PR +GPW+ +
Sbjct: 95  YKYNYNNNNYNKKLYYNINYIEQIPIPVPVY--YGNF-----LPRPMGPWISI 140


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 513 PRLLGPWLDVMCLVENGSC 569
           PR +GPW+ V   V    C
Sbjct: 132 PRPMGPWISVQEQVPRFRC 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,557
Number of Sequences: 438
Number of extensions: 3248
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)