Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0852
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77620.1 68414.m09037 expressed protein 47 1e-05
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 30 1.3
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 30 1.3
At5g63550.1 68418.m07976 expressed protein 29 2.2
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 29 3.9
At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA methyltran... 28 5.1
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 28 6.8
At4g32650.2 68417.m04648 inward rectifying potassium channel, pu... 28 6.8
At4g32650.1 68417.m04647 inward rectifying potassium channel, pu... 28 6.8
At3g54760.1 68416.m06059 dentin sialophosphoprotein-related cont... 27 8.9
>At1g77620.1 68414.m09037 expressed protein
Length = 1151
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANSFENS 175
GSGK+++++A A E K++E N S R+G ++ Q EA KS+ ++R+ + NS
Sbjct: 395 GSGKSAAIHACAKEQGFKILESNTSECRSGTVVRQKFGEALKSYSLSRSLDPLFNS 450
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Frame = +1
Query: 364 FEQDDGFCSAIVQIVQSSKRPVILVTS--SFSCP-HLQR----FLLSGKILKFNQLCLDC 522
F +D G SAI QI +K PV+L + + P +L+R F L K FN L L C
Sbjct: 489 FAEDRGLVSAIQQIAVKAKGPVVLTANDKNHGLPDNLERIEIYFSLPSKEELFNHLSLVC 548
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 5 RGSGKTSSVYAVAAELAIKVIEVNASTKRNG 97
RG+GKTS A+AAE + V+ V A G
Sbjct: 466 RGTGKTSLALAIAAEARVPVVNVEAQELEAG 496
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 2 ARGSGKTSSVYAVAAELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANS 163
A G GKT+ + A +V+E+NAS +R+ I + + + + V TA+S
Sbjct: 353 APGLGKTTLAHIAAKHCGYRVVEINASDERSASAIETRILDVVQMNSV--TADS 404
>At5g63550.1 68418.m07976 expressed protein
Length = 530
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 47 ELAIKVIEVNASTKRNGKIILQDLREATKSHKVNRTANSFENSQKSQEIVIQDVPKKRGR 226
ELA+KV+E S K +I+ D +A K + S E+S D P KR R
Sbjct: 227 ELAVKVLEFLESPKETRDVIIADQEKAKKRKSTPKRGKSGESS---------DTPAKRKR 277
Query: 227 -TKK 235
TKK
Sbjct: 278 QTKK 281
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 7/57 (12%)
Frame = +2
Query: 8 GSGKTSSVYAVAAEL-----AIKVIEVNASTKRNGKIILQDLRE--ATKSHKVNRTA 157
G+GKTS++ AVA +L ++E+NAS R ++ Q +++ +T+S + +++
Sbjct: 82 GTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSS 138
>At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to SP|Q9P804
N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC
2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase)
{Schizosaccharomyces pombe}; contains Pfam profile
PF02005: N2,N2-dimethylguanosine tRNA methyltransferase
Length = 691
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +2
Query: 86 KRNGKIILQDLREATKSHKVNRTANSFENSQKSQEIVIQDVPKKRGRT 229
+ +GK++ +D+ E +K + + E+ QD PK+ +T
Sbjct: 161 RSSGKVVEKDVSETSKEETPTENGDDNGKTNGEHEVTTQDGPKEAAKT 208
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 8 GSGKTSSVYAVAAELAIKVIEVNASTKR 91
G GKT+S V+ L + +EVNAS R
Sbjct: 403 GIGKTTSAKLVSQMLGFQAVEVNASDSR 430
>At4g32650.2 68417.m04648 inward rectifying potassium channel,
putative (KAT3) (AKT4) (KC1) identical to K+ inward
rectifying channel protein KC1 [Arabidopsis thaliana]
gi|4090537|gb|AAC98810; similar to (KAT1) K+ channel
[Arabidopsis thaliana] gi|1165000|emb|CAA63601;
Shaker-type channel (1P/6TM), PMID:11500563
Length = 597
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 313 LLDYFVKNL*NVFYLNVFQFIIFLNRFLCSTAF 215
+L +FV L N YLNV + R+L S AF
Sbjct: 134 ILTFFVSYLDNTTYLNVTDHKLIAKRYLKSVAF 166
>At4g32650.1 68417.m04647 inward rectifying potassium channel,
putative (KAT3) (AKT4) (KC1) identical to K+ inward
rectifying channel protein KC1 [Arabidopsis thaliana]
gi|4090537|gb|AAC98810; similar to (KAT1) K+ channel
[Arabidopsis thaliana] gi|1165000|emb|CAA63601;
Shaker-type channel (1P/6TM), PMID:11500563
Length = 662
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 313 LLDYFVKNL*NVFYLNVFQFIIFLNRFLCSTAF 215
+L +FV L N YLNV + R+L S AF
Sbjct: 134 ILTFFVSYLDNTTYLNVTDHKLIAKRYLKSVAF 166
>At3g54760.1 68416.m06059 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor (Dentin phosphophoryn DPP,
Dentin sialoprotein DSP) [Homo sapiens]
Length = 792
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 164 FENSQKSQEIVIQDVPKKRGR 226
F NS SQ++ + V KKRGR
Sbjct: 582 FRNSSASQQVTTEKVSKKRGR 602
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,448,657
Number of Sequences: 28952
Number of extensions: 248614
Number of successful extensions: 638
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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